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. 2015 Dec 17;90(1):317–331. doi: 10.1128/JVI.01532-15

FIG 2.

FIG 2

Flowchart describing the sample classification procedure. For the alignment of the consensus sequence to both the reference sequence (ref) and the de novo assembly, our primary goal was to identify the primary consensus genotype and remove any mixtures that got through the initial intratypic differentiation process.