TABLE 2.
Genome assembly statistics of sequenced Clostridium sporogenes isolatesa
| Strain | Est. size (bp) | No. of reads (bp) | No. of bases (bp) | Est. coverage | Max. N50 (bp) | Max. length (bp) | Total size (bp) | No. of contigs of the following size: |
% genome | % GC content | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| >1 kbp | >5 kbpb | >100 kbp | ||||||||||
| PA 3679c | 4,173,562 | - | - | ∼200 | - | - | - | 181 | 131 | 4 | - | 27.83 |
| ATCC 15579c | 4,102,125 | - | - | - | - | - | - | 4 | 3 | 3 | - | 28.02 |
| ATCC 15579d | 4,102,125 | 1,538,278 | 384,569,500 | 94 | 146,994 | 366,529 | 4,060,754 | 58 | 45 | 15 | 98.99 | 27.85 |
| 1961-2 | 4,173,562 | 3,298,626 | 824,656,500 | 198 | 213,496 | 811,671 | 4,095,436 | 42 | 27 | 14 | 98.13 | 27.88 |
| 1990 | 4,173,562 | 3,927,744 | 981,936,000 | 235 | 187,341 | 545,953 | 4,167,596 | 59 | 49 | 11 | 99.86 | 27.85 |
| 2007 | 4,173,562 | 4,641,772 | 1,160,443,000 | 278 | 321,923 | 1,217,917 | 4,174,960 | 33 | 21 | 12 | 100.03 | 27.83 |
| 1961-4 | 4,173,562 | 3,388,606 | 847,151,500 | 203 | 115,686 | 306,290 | 3,975,480 | 88 | 46 | 16 | 95.25 | 28.01 |
| Campbell | 4,173,562 | 7,846,204 | 1,961,551,000 | 470 | 159,201 | 424,558 | 3,991,459 | 60 | 34 | 19 | 95.64 | 28.01 |
| FDA | 4,173,562 | 4,780,078 | 1,195,019,500 | 286 | 151,701 | 306,291 | 4,023,031 | 87 | 38 | 18 | 96.39 | 28.01 |
| NFL | 4,173,562 | 2,954,430 | 738,607,500 | 177 | 136,601 | 306,614 | 3,958,149 | 77 | 49 | 18 | 94.84 | 28.00 |
| UW | 4,173,562 | 19,211,592 | 4,802,898,000 | 1,151 | 150,182 | 306,290 | 3,930,977 | 48 | 36 | 19 | 94.19 | 27.99 |
a
Est., estimated; Max. maximum. Hyphens in the table indicate that the data were not available in GenBank.
b
Contigs smaller than 5 kbp are potentially spurious.
c
NCBI reference assemblies NZ_AGAH00000000.1 (PA 3679) and NZ_ABKW00000000.2 (ATCC 15579).
d
This study.