Table 1. Comparison of CAMPR3 with few of the existing AMP databases.
Database | Sequences | Structures | Signatures | Nature of data | Reference |
---|---|---|---|---|---|
CAMPR3 | 10247 | 757 | 114 (36 Patterns and 78 HMMs) | General | - |
APD2 | 2604 | 350 | Absent | General | (21) |
AMPer | 1298 | Absent | 186 HMMs | Eukaryotic AMPs | (30) |
LAMP | 5548 | Presenta | Absent | General | (31) |
BACTIBASE | 228 | 72 | Presenta | Bacteriocins | (32) |
YADAMP | 2525 | Presenta | Absent | General | (33) |
PhytAMP | 273 | 39 | Presenta | Plant AMPs | (34) |
Peptaibiotics database | 1344 | Absent | Absent | Peptaibols | (35) |
Defensins Knowledgebase | 566 | Presenta | Absent | Defensins | (36) |
aDifficult to retrieve total count.