Table 1. Summary of SomamiR 2.0 contents*.
Database Contents | Version/Counts |
---|---|
Genome build | GRCH 38 |
Somatic mutations in pre-miRNA sequences | 1779 |
Somatic mutations in mature miRNA sequences | 644 |
Somatic mutations in miRNA seeds | 181 |
Somatic mutations (records) in experimentally identified miRNA target sites | 388 247 (512 047) |
Somatic mutations (records) in predicted miRNA target sites | 96 181 (2 868 677) |
Biological pathways impacted by somatic mutation in miRNA target sites | 199 |
Cancer-associated genes with somatic mutations in their miRNA target sites | 3049 |
Types of cancers | 620 |
*The numbers in the parentheses are the counts of database records for somatic mutations in miRNA target sites. A record consists of a miRNA, a target site of the miRNA and a somatic mutation in the target site. Multiple miRNAs may share same target sites or have overlapping target sites.