Table 5. Coverage gains for each organism, using Dfam + nhmmer.
| Genome size (no Ns) | Interspersed repeats (bp) | All repeats (bp) | Increase (bp) | Increase (% of genome) | ||
|---|---|---|---|---|---|---|
| Human | Consensus | 2 937 655 681 | 1 416 407 169 | 1 536 018 323 | ||
| Dfam | 1 570 963 110 | 1 686 550 773 | 150 532 450 | 5.1% | ||
| Mouse | Consensus | 2 647 537 730 | 1 091 472 267 | 1 179 145 848 | ||
| Dfam | 1 234 765 488 | 1 324 034 627 | 144 888 779 | 5.5% | ||
| Zebrafish | Consensus | 1 338 605 546 | 715 260 228 | 785 961 593 | ||
| Dfam | 781 171 892 | 844 630 681 | 58 669 088 | 4.4% | ||
| Fly | Consensus | 137 077 099 | 20 456 863 | 25 281 658 | ||
| Dfam | 21 611 976 | 26 230 068 | 948 410 | 0.7% | ||
| Nematode | Consensus | 100 286 070 | 10 245 891 | 12 532 750 | ||
| Dfam | 16 904 376 | 19 030 107 | 6 497 357 | 6.5% |
RepeatMasker was used to search each organism as in Table 4. The genome size corresponds to assemblies hg38, mm10, danRer10, dm6 and ce10 respectively, in each case with _random, chrUn and _alt sequences removed and Ns ignored.