Table 1. Database content of RBP-Var as of 10 October, 2015.
| Data type | Sources | Description | Records | Genomic coverage (bp) |
|---|---|---|---|---|
| CLIP-seq | starBase, CLIPdb, GEO | 112 data sets for 60 RBPs | 52,528,288 | 847,717,483 |
| Predicted binding (PWMs) | CISBP-RNA, RBPDB | 319 PWMs for 153 RBPs | 119,777,778 | 822,156,225 |
| dbSNP | dbSNP v142 | including SNP,InDel and MNP | 113,128,211 | 113,128,211 |
| RNA editing | RADAR,DARNED | A->G editing | 2,576,460 | 2,576,460 |
| miRNA targets | TargetScan, miRanda, miRNASNP | miRNA-SNP pairs | 3,361,915 | 26,958,420 |
| eQTLs | MuTher, SCAN, seeQTL, GTEx, Harvard | SNP-gene pairs | 4,546,890 | 4,546,890 |
| dsQTLs | dsQTL Browser | SNP-gene pairs | 214,522 | 214,522 |
| LD proxies | HapMap, 1000Genome | r2>0.8 by Plink | 4,600,670 | 4,600,670 |
| 6mA | MeT-DB | 6mA peaks called by MACS | 466,037 | 127,588,574 |
| Splicing sites | H-DBAS | including 7 splicing patterns | 1,669,641 | 158,324,909 |
| trait/disease associations | GWAS, COSMIC, ClinVar, TCGA, DISEASES | SNP-trait or gene-trait pairs | 8,955,125 | 8,955,125 |