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. 2015 Nov 4;93(5):998–1001. doi: 10.4269/ajtmh.15-0336

Table 1.

Number of Anopheles darlingi (N), alleles (A), private alleles (AP), alleles with specified allelic frequencies, inbreeding coefficient (FIS), and Wilcoxon signed rank and mode shift tests for bottlenecks using 14 microsatellite loci, by source population

Field An. darlingi Colony An. darlingi
May 12 October 12 April 13 F5 F12 F21
N 53 41 12 21 28 30
An.s. 113 104 80 72 73 62
AP* 12 6 4 5 4 1
A frequency ≥ 0.50* 2 4 3 7 7 9
A frequency < 0.05* 48 34§ 19 25 19 10§
FISn.s. 0.47 0.48 0.52 0.61 0.57 0.63
Wilcoxon test
 TPMn.s. 0.0083 0.0083 0.0148 0.0676 0.1206 0.1206
 SMMn.s. 0.9973 0.9877 0.8662 0.9979 0.9324 0.8794
 Mode shift Normal Normal Normal Normal Normal Normal

ANOVA = analysis of variance; SMM = stepwise mutation model; TPM = two-phase model.

*

Statistically significant differences by collection, over all 14 loci in AP, A frequency ≥ 0.50, and A frequency < 0.05 (repeated measures ANOVA, P = 0.012, P = 0.000821, and P = 9.23 × 10−6, respectively).

†, ‡, §

Statistically significant post hoc, Bonferroni-corrected pairwise t tests.

TPM settings: proportion of SMM in TPM = 0; variance of geometric distribution for TPM = 36 [per Bottleneck software website (http://www1.montpellier.inra.fr/CBGP/software/Bottleneck/pub.html)].

n.s.

No statistically significant differences by collection, over all 14 loci in A, nor FIS (ANOVA, P = 0.0669, and P = 0.9, respectively).