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. 2016 Jan 6;11(1):e0144717. doi: 10.1371/journal.pone.0144717

Table 3. MetaMap to HIMERA category mappings.

MetaMap Categories HIMERA Category Filtering Rules
Anatomical Abnormality, Body Substance, Body Part, Organ, Organ Component, Body Location or Region, Body Space or Junction, Tissue Anatomical
Animal, Mammal, Cell, Bacterium, Organism Biological_Entity
Food, Chemical Viewed Structurally, Element, Ion, or Isotope, Hazardous or Poisonous Substance, Substance, Natural Phenomenon or Process Environmental
Disease or Syndrome, Pathologic Function Condition Must be a noun phrase
Clinical Drug, Amino Acid, Peptide, or Protein, Immunologic Factor, Organic Chemical, Pharmacologic Substance, Biologically Active Substance, Lipid Therapeutic_or_Investigational Must be a noun phrase; Length must be greater than 1
Sign or Symptom, Finding Sign_or_Symptom Tagged as noun
Group, Patient or Disabled Group Subject