Skip to main content
. 2016 Jan 6;11(1):e0146522. doi: 10.1371/journal.pone.0146522

Table 1. Euclidean distances between N1-N9, M1-M8 and the SAXS derived model conformations in the PC subspace.

The distance in PCA subspace is calculated using the coefficients of the PC vectors of each conformation projected to the PC subspace and is in arbitrary units (a.u.). RMSD calculations are based on the Cα, C and N atoms of the protein backbone. The states shown in bold italic font are close to nearby SAXS derived models with distances of less than 100.

Ensemble (20 ns) N1 N2 N3 N4 N5 N6 N7 N8 N9
SAXS models 3p68 5p93 9p31 7p26 7p26 9p31 7p22 3p68 5p96
Distance (a.u.) 320 98 162 174 117 63 53 76 89
RMSD (Å): D1-D3 18 10 15 8 8 7 8 12 10
RMSD (Å): D1-D2 3.8 2.5 3.4 2.7 2.7 2.9 3.1 2.7 3
Ensemble (30 ns) M1 M2 M3 M4 M5 M6 M7 M8
SAXS models 3p68 3p68 5p93 7p26 9p31 7p26 7p22 3p68
Distance (a.u.) 317 94 92 105 165 170 50 372
RMSD (Å): D1-D3 18 13 10 7 15 8 7 13
RMSD (Å): D1-D2 4.3 3.2 2.5 3.4 2.8 3 3.4 2.8