Table 1. Euclidean distances between N1-N9, M1-M8 and the SAXS derived model conformations in the PC subspace.
The distance in PCA subspace is calculated using the coefficients of the PC vectors of each conformation projected to the PC subspace and is in arbitrary units (a.u.). RMSD calculations are based on the Cα, C and N atoms of the protein backbone. The states shown in bold italic font are close to nearby SAXS derived models with distances of less than 100.
Ensemble (20 ns) | N1 | N2 | N3 | N4 | N5 | N6 | N7 | N8 | N9 |
---|---|---|---|---|---|---|---|---|---|
SAXS models | 3p68 | 5p93 | 9p31 | 7p26 | 7p26 | 9p31 | 7p22 | 3p68 | 5p96 |
Distance (a.u.) | 320 | 98 | 162 | 174 | 117 | 63 | 53 | 76 | 89 |
RMSD (Å): D1-D3 | 18 | 10 | 15 | 8 | 8 | 7 | 8 | 12 | 10 |
RMSD (Å): D1-D2 | 3.8 | 2.5 | 3.4 | 2.7 | 2.7 | 2.9 | 3.1 | 2.7 | 3 |
Ensemble (30 ns) | M1 | M2 | M3 | M4 | M5 | M6 | M7 | M8 | |
SAXS models | 3p68 | 3p68 | 5p93 | 7p26 | 9p31 | 7p26 | 7p22 | 3p68 | |
Distance (a.u.) | 317 | 94 | 92 | 105 | 165 | 170 | 50 | 372 | |
RMSD (Å): D1-D3 | 18 | 13 | 10 | 7 | 15 | 8 | 7 | 13 | |
RMSD (Å): D1-D2 | 4.3 | 3.2 | 2.5 | 3.4 | 2.8 | 3 | 3.4 | 2.8 |