Table 1. Methylation levels (Log2 fold change ≥ 1) of miRNA loci in ATR-exposed rice.
| miRNA | (ATR) | (CK) | Log2MLATR/MLCK | E | TA | Targets |
|
|---|---|---|---|---|---|---|---|
| Gene ID | Description | ||||||
| MIR394 | 0.45 | 0.21 | 2.14↑ | 0.0 | 21.4 | LOC_Os01g69940.1 | OsFBX32-F-box domain containing protein |
| 2.5 | 20.9 | LOC_Os04g40220.1 | Transposon protein, putative, CACTA, En/Spm | ||||
| MIR812c | 0.19 | 0.04 | 2.25↑ | 0.0 | 15.3 | LOC_Os03g48380.1 | Expressed protein |
| 0.5 | 17.2 | LOC_Os02g23823.2 | Helix-loop-helix DNA-binding domain containing protein, | ||||
| 1.0 | 8.2 | LOC_Os07g26690.1 | Aquaporin protein, putative | ||||
| 2.5 | 11.6 | LOC_Os04g20474.3 | UDP-glucoronosyl /UDP-glucosyl transferase | ||||
| MIR812o | 0.15 | 0.05 | 3.00↑ | 1.0 | 14.5 | LOC_Os04g33720.1 | Glycosyl hydrolases, putative |
| 3.0 | 11.4 | LOC_Os04g20474.1 | UDP-glucoronosyl/UDP-glucosyl transferase domain containing protein | ||||
| MIR812q | 0.37 | 0.17 | 1.12↑ | 1.5 | 14.6 | LOC_Os03g22050.1 | CAMK includes calcium/calmodulin depedent protein kinases |
| 3.5 | 15.7 | LOC_Os04g08828.1 | Cytochrome P450, putative | ||||
| MIR812r | 0.37 | 0.17 | 1.12↑ | 1.5 | 12.2 | LOC_Os11g09260.1 | Expressed protein |
| 3.5 | 15.4 | LOC_Os12g29700.1 | Retrotransposon protein, putative, unclassified | ||||
| MIR1437a | 0.76 | 0.35 | 2.17↑ | 3.0 | 22.1 | LOC_Os07g05420.1 | Anthocyanidin 3-O-glucosyltransferase |
| 3.5 | 21.2 | LOC_Os07g05330.1 | Transposon protein, putative, CACTA, En/Spm | ||||
| 3.5 | 16.5 | LOC_Os03g19290.2 | Mitochondrial import inner membrane translocase subunit Tim17 | ||||
| MIR1437b | 0.76 | 0.35 | 2.17↑ | 2.5 | 14.4 | LOC_Os05g08410.2 | ATP10 protein |
| 3.0 | 14.9 | LOC_Os05g40720.1 | Glycosyltransferase, family 8 | ||||
| 3.0 | 21.2 | LOC_Os06g13740.1 | Transposon protein, putative | ||||
| MIR1862d | 0.47 | 0.18 | 1.38↑ | 2.5 | 18.5 | LOC_Os10g40960.1 | Oxidoreductase, 2OG-Fe oxygenase family protein |
| 2.5 | 15.9 | LOC_Os02g39070.1 | Vesicle transport protein GOT1B | ||||
| 3.0 | 15.9 | LOC_Os01g53390.1 | Glucosyltransferase | ||||
| MIR1862e | 0.56 | 0.21 | 1.42↑ | 2.0 | 18.5 | LOC_Os02g30730.1 | SART-1 family protein |
| 3.5 | 6.6 | LOC_Os05g03174.1 | Glycosyltransferase family 43 protein | ||||
| 3.5 | 11.6 | LOC_Os04g46980.1 | Cis-zeatin O-glucosyltransferase | ||||
| MIR2101 | 0.27 | 0.09 | 1.58↑ | 3.0 | 10.8 | LOC_Os01g04650.1 | PB1 domain containing protein |
| 3.0 | 16.5 | LOC_Os03g51440.1 | LRR receptor-like protein kinase | ||||
| MIR2921 | 0.18 | 0.01 | 4.17↑ | 3.0 | 16.6 | LOC_Os03g12160.1 | Leucine-rich repeat family protein |
| 3.5 | 10.9 | LOC_Os02g36570.1 | ABC1 family domain containing protein | ||||
| MIR5179 | 0.36 | 0.15 | 1.26↑ | 1.0 | 24.6 | LOC_Os06g49840.2 | OsMADS16 - MADS-box family gene with MIKCc type-box, |
| 3.0 | 16.3 | LOC_Os03g33300.1 | Retrotransposon, putative, centromere-specific | ||||
| MIR5490 | 0.43 | 0.21 | 1.03↑ | 2.0 | 15.6 | LOC_Os08g36360.1 | Retrotransposon protein, putative, Ty1-copia |
| 2.5 | 9.8 | LOC_Os12g09400.1 | Retrotransposon protein, putative, Ty1-copia | ||||
| 2.5 | 12.8 | LOC_Os07g12350.1 | Retrotransposon protein, putative, Ty1-copia | ||||
| MIR5810 | 0.87 | 0.29 | 3.00↑ | 3.5 | 14.8 | LOC_Os01g32870.2 | Heat shock protein DnaJ |
| 3.5 | 22.1 | LOC_Os08g01120.1 | Sulfate transporter, putative | ||||
| 3.5 | 15.8 | LOC_Os03g32470.2 | Leucoanthocyanidin dioxygenase, putative | ||||
| MIR5817 | 0.24 | 0.10 | 1.26↑ | 1.0 | 11.5 | LOC_Os03g64140.1 | Expressed protein |
| 3.0 | 18.0 | LOC_Os10g06230.1 | Retrotransposon protein, putative, Ty3-gypsy | ||||
| 3.5 | 14.1 | LOC_Os08g45010.1 | ABC transporter, ATP-binding protein | ||||
| 3.5 | 4.8 | LOC_Os07g30950.1 | Hydroxylase | ||||
↑,up-methylation in comparison with control sample; ML, methylated level; E, expectation value; TA, target accessibility-maximum energy to unpair the target site.