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. 2016 Jan 7;11(1):e0146386. doi: 10.1371/journal.pone.0146386

Fig 1. Haploview APOBEC3G linkage disequilibrium plots for case and controls.

Fig 1

The figures are oriented 5’ to 3’, right to left, relative to the gene orientation on the minus strand. Fig 1a represents the LD plot of the case pairwise D’ between markers, and Fig 1b shows the LD plot of the control pairwise D’ between markers. Strong LD is indicated by red, while pink indicate uninformative values. LD blocks were created with the default algorithm in the Haploview software (version 4.1) that creates 95% confidence bounds. D’ was considered strong where 95% of the comparisons made are informative.