Table 11.
The details of predicted complexes of SLPC on original PPI networks with different integrating thresholds.
| int_ thred |
DIP | Krogan | Gavin | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| #gl_sz | #cluster | #size | #matched | #gl_sz | #cluster | #size | #matched | #gl_sz | #cluster | #size | #matched | |
| Origin | 7.18 | 844 | 9.49 | 543 | 6.95 | 710 | 14.97 | 419 | 6.27 | 337 | 9.01 | 273 |
| 0 | 7.18 | 981 | 9.14 | 606 | 6.95 | 787 | 12.30 | 486 | 6.27 | 351 | 8.99 | 289 |
| -0.1 | 7.18 | 1033 | 9.92 | 616 | 6.95 | 816 | 12.71 | 497 | 6.27 | 360 | 8.98 | 299 |
| -0.2 | 7.18 | 1110 | 8.66 | 652 | 6.95 | 853 | 11.42 | 516 | 6.27 | 369 | 8.85 | 303 |
| -0.3 | 7.18 | 1195 | 8.5 | 717 | 6.95 | 891 | 10.28 | 549 | 6.27 | 380 | 8.81 | 308 |
| -0.4 | 7.18 | 1271 | 8.39 | 736 | 6.95 | 968 | 10.45 | 578 | 6.27 | 396 | 8.86 | 319 |
| -0.5 | 7.18 | 1396 | 8.26 | 797 | 6.95 | 1040 | 10.03 | 595 | 6.27 | 397 | 8.94 | 318 |
| -0.6 | 7.18 | 1580 | 8.42 | 889 | 6.95 | 1149 | 9.55 | 653 | 6.27 | 426 | 8.97 | 337 |
| -0.7 | 7.18 | 1713 | 8.47 | 918 | 6.95 | 1243 | 9.26 | 663 | 6.27 | 446 | 9.07 | 347 |
| -0.8 | 7.18 | 1928 | 8.72 | 1006 | 6.95 | 1402 | 9.24 | 718 | 6.27 | 475 | 8.89 | 367 |
| -0.9 | 7.18 | 2147 | 8.77 | 1084 | 6.95 | 1555 | 9.10 | 816 | 6.27 | 521 | 9.01 | 395 |
| -1.0 | 7.18 | 2171 | 9.12 | 1043 | 6.95 | 1612 | 8.83 | 834 | 6.27 | 540 | 8.88 | 393 |
| -1.1 | 7.18 | 2139 | 9.40 | 995 | 6.95 | 1618 | 9.08 | 825 | 6.27 | 555 | 8.81 | 404 |
| -1.2 | 7.18 | 2171 | 9.46 | 1016 | 6.95 | 1636 | 9.26 | 830 | 6.27 | 555 | 8.93 | 402 |
#gl_size denotes the average size of the gold standard protein complexes on original PPI networks; #size denotes the average size of predicted complexes. #cluster denotes the number of predicted complexes on extended PPI networks; #matched denotes the matching number between the predicted complexes and the gold standard protein complexes;