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. 2015 Dec 15;44(1):95–105. doi: 10.1093/nar/gkv1457

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — MMB Control GUI and visualization of MMB commands on the 3D model in Chimera. The GUI allows one to specify forces, constraints, flexibility, and run parameters for an MMB job. Related MMB modeling features are organized in tabs. The user can add commands or specify parameters using drop-down lists or text fields, or by selecting objects in the 3D view and clicking the From Selection button. Conversely, selecting an object in the GUI highlights the corresponding object in the 3D view. The ApplyViz button displays a representation of all the commands on the 3D model with colors and shapes as described in the legend (added on the figure). We here show a model of an mRNA-tRNA interaction.