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. 2015 Sep 8;44(1):e8. doi: 10.1093/nar/gkv873

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — GSCA demonstrated using the MYC example. (A) Panel for uploading gene set files. (B) Panel for inputting ENTREZ gene IDs. (C) Panel for selecting available compendia or uploading users’ own compendium. (D) GSCA scatter plot showing the default numeric POI. (E) POI defined interactively by drawing a polygon. (F) Ranking table reported by GSCA showing the top biological contexts associated with the numeric POI. (G) Scatter plot that highlights samples from five most significant biological contexts in the analysis of POI interactively specified in (E).