Table 2. Results of analysing HiCUP-processed CHi-C data with CHiCAGO.
The table shows the number of statistically significant interactions identified in each of the datasets when duplicate di-tags are retained (Dups) or removed (No dups). The percentage of unique di-tags in each dataset is also shown. (*Unique corresponds to the percentage of di-tags retained after removing all but one representative copy of each di-tag.)
| Significant interactions | |||
|---|---|---|---|
| Sample | Unique(%)* | Dups | No dups |
| 1 | 95.2 | 166,255 | 49,365 |
| 2 | 92.3 | 328,336 | 69,394 |
| 3 | 13.8 | 3,830,718 | 12,419 |
| 4 | 17.5 | 2,931,635 | 5,041 |
| 5 | 19.2 | 2,988,112 | 3,527 |