Table 3.
Concordance of genotypes between RH clone passages p6, p6*, and p16*
| RH Clones | Comparison between p6* and p6 | Comparison between p6* and p16* | |||||
|---|---|---|---|---|---|---|---|
|
| |||||||
| N1 | p6* drop-out (%) | p6 drop-out (%) | Concordance (%) | p6* drop-out (%) | p16* drop-out (%) | Concordance (%) | |
| MAEA | 4 | 0.0 | 25.0 | 75.0 | 0.0 | 25.0 | 75.0 |
| GRPEL1 | 4 | 0.0 | 0.0 | 100.0 | 0.0 | 25.0 | 75.0 |
| SORCS2 | 5 | 0.0 | 20.0 | 80.0 | 0.0 | 40.0 | 60.0 |
| MORF4 | 3 | 0.0 | 33.3 | 66.7 | 0.0 | 33.3 | 66.7 |
| MAN2B2 | 6 | 0.0 | 33.3 | 66.7 | 0.0 | 66.7 | 33.3 |
| STX18 | 3 | 0.0 | 0.0 | 100.0 | 0.0 | 33.3 | 66.7 |
| DRD5 | 4 | 25.0 | 25.0 | 50.0 | 0.0 | 66.7 | 33.3 |
| D4S1582 | 6 | 16.7 | 16.7 | 66.7 | 0.0 | 20.0 | 80.0 |
| HS3ST1 | 3 | 0.0 | 0.0 | 100.0 | 25.0 | 0.0 | 75.0 |
| HS3ST1_1 | 7 | 28.6 | 28.6 | 42.9 | 20.0 | 20.0 | 60.0 |
| RAB28 | 6 | 16.7 | 16.7 | 66.7 | 25.0 | 25.0 | 50.0 |
| CPEB2 | 6 | 0.0 | 16.7 | 83.3 | 0.0 | 66.7 | 33.3 |
| GBA3 | 4 | 0.0 | 0.0 | 100.0 | 0.0 | 50.0 | 50.0 |
| RBPSUH | 4 | 0.0 | 25.0 | 75.0 | 0.0 | 25.0 | 75.0 |
| STIM2 | 5 | 20.0 | 40.0 | 40.0 | 0.0 | 0.0 | 100.0 |
| PCDH7 | 5 | 20.0 | 0.0 | 80.0 | 0.0 | 25.0 | 75.0 |
| TBC1D1 | 4 | 25.0 | 0.0 | 75.0 | 0.0 | 0.0 | 100.0 |
| KIAA1239 | 7 | 28.6 | 0.0 | 71.4 | 0.0 | 50.0 | 50.0 |
| KLF3 | 6 | 0.0 | 0.0 | 100.0 | 0.0 | 100.0 | 0.0 |
| LIAS | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 100.0 | 0.0 |
| RHOH | 3 | 0.0 | 0.0 | 100.0 | 0.0 | 33.3 | 66.7 |
| AB047909 | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 60.0 | 40.0 |
| CCNI | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 20.0 | 80.0 |
| SHROOM3 | 5 | 20.0 | 0.0 | 80.0 | 0.0 | 0.0 | 100.0 |
| ART3 | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 20.0 | 80.0 |
| PPEF2 | 7 | 14.3 | 14.3 | 71.4 | 0.0 | 66.7 | 33.3 |
| RCHY1 | 4 | 0.0 | 0.0 | 100.0 | 0.0 | 25.0 | 75.0 |
| PPBP | 6 | 16.7 | 16.7 | 66.7 | 20.0 | 40.0 | 40.0 |
| EPHA5 | 6 | 0.0 | 50.0 | 50.0 | 0.0 | 66.7 | 33.3 |
| LPHN3 | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 20.0 | 80.0 |
| IGFBP7 | 6 | 0.0 | 0.0 | 100.0 | 0.0 | 66.7 | 33.3 |
| REST | 7 | 0.0 | 0.0 | 100.0 | 0.0 | 42.9 | 57.1 |
| AB050266 | 5 | 20.0 | 0.0 | 80.0 | 0.0 | 50.0 | 50.0 |
| KDR | 4 | 0.0 | 0.0 | 100.0 | 0.0 | 25.0 | 75.0 |
| KIT | 6 | 16.7 | 0.0 | 83.3 | 0.0 | 60.0 | 40.0 |
| LNX | 6 | 16.7 | 0.0 | 83.3 | 0.0 | 80.0 | 20.0 |
| SPATA18 | 5 | 0.0 | 0.0 | 100.0 | 0.0 | 20.0 | 80.0 |
| DCUN1D4 | 7 | 0.0 | 0.0 | 100.0 | 0.0 | 50.0 | 50.0 |
| SOAT | 6 | 16.7 | 33.3 | 50.0 | 0.0 | 100.0 | 0.0 |
| KLHL8 | 4 | 25.0 | 0.0 | 75.0 | 0.0 | 100.0 | 0.0 |
| AB047948 | 5 | 40.0 | 0.0 | 60.0 | 0.0 | 100.0 | 0.0 |
| UCP1 | 4 | 25.0 | 25.0 | 50.0 | 0.0 | 100.0 | 0.0 |
| ARHGAP10 | 3 | 0.0 | 0.0 | 100.0 | 0.0 | 33.3 | 66.7 |
| CCNA2 | 7 | 71.4 | 14.3 | 14.3 | 0.0 | 50.0 | 50.0 |
| HSP90AA6P | 8 | 0.0 | 12.5 | 87.5 | 0.0 | 75.0 | 25.0 |
| ANP32C | 4 | 0.0 | 0.0 | 100.0 | 0.0 | 50.0 | 50.0 |
|
| |||||||
| Average | 10.1 | 9.7 | 80.2 | 2.0 | 46.2 | 51.8 | |
1
This table summarizes the concordances from Supplementary Table 1. N is the number of clones harboring the marker