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. 2004 Aug;72(8):4589–4602. doi: 10.1128/IAI.72.8.4589-4602.2004

TABLE 2.

Primers for RT-PCR

Primer RT-PCR function Sequence Predicted size (bp)
YopM mutant construction
    Left flanking DNA
        LFup ACATTAGAGCTCTGCCTGTCTCCGTTCTTG 1,183
        LFdown TACTATCTGCAGTGTATGGCCGCAGAGT
    Right flanking DNA
        RFup TGCTGCAGACGCAAGAGCGTTCAT 1,242
        RFdown ATCTCTCGAGACGCCACCGTTGATTA
Cytokine message analysis
    IFN-γ Forward 5′ TAC TGC CAC GGC ACA GTC ATT GAA 3′ 406
    IFN-γ Reverse 5′ GCA GCG ACT CCT TTT CCG CTT CCT 3′
    TNF-α Forward 5′ ATG AGC ACA GAA AGC ATG ATC 3′ 276
    TNF-α Reverse 5′ TAC AGG CTT GTC ACT CGA ATT 3′
    IL-1β Forward 5′ CAG GAT GAG GAC ATG AGC ACC 3′ 447
    IL-1β Reverse 5′ CTC TGC AGA CTC AAA CTC CAC 3′
    IL-4 Forward 5′ ACG GAG ATG GAT GTG CCA AAC GTC 3′ 279
    IL-4 Reverse 5′ CGA GTA ATC CAT TTG CAT GAT GC 3′
    IL-6 Forward 5′ GAA AAT CTG CTC TGG TCT TCT GG 3′ 227
    IL-6 Reverse 5′ TTT TCT GAC CAC AGT GAG GAA TG 3′
    IL-10 Forward 5′ CTG CTC CAC TGC CTT GCT CTT ATT 3′ 275
    IL-10 Reverse 5′ GTG AAG ACT TTC TTT CAA ACA AAG 3′
    IL-12 Forward 5′ GGA GAC CCT GCC CAT TGA ACT 3′ 407
    IL-12 Reverse 5′ CAA CGT TGC ATC CTA GCA TCG 3′
    IL-15 Forward 5′ GAA TAC ATC CAT CTC GTG CTA CT 3′ 422
    IL-15 Reverse 5′ TTT GCA AAA ACT CTG TGA AGG 3′
    IL-15Rα Forward 5′ TGC TGC TGC TGC TGT TGC TA 3′ 386
    IL-15Rα Reverse 5′ TGT CTC TGT GGT CAT TGC GGT AT 3′
    IL-18 Forward 5′ GCC TCT AGA GTG AAC ATT ACA GAT TTA TCC CCA 3′ 436
    IL-18 Reverse 5′ ACC GAA TTC ACT GTA CAA CCG CAG TAA TAG GGA 3′
    β-Actin Forward 5′ GTG GGC CGC TCT AGG CAC CA 3′ 245
    β-Actin Reverse 5′ CGC TTG GCC TTA GGG TTC AGG GGG G 3′