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. 2016 Jan 11;6:1551. doi: 10.3389/fmicb.2015.01551

Table 1.

Assembly statistics and annotation features of bacterial isolates from rice and their accession numbers.

S.No Strain Genome size (bp) Coverage(x) Contigs N50(bp) Coding Density (%) Genes tRNA Accession No.
1 Aureimonas ureilytica NS226 5119943 105 287 101071 80.2 4846 58 LDPZ00000000
2 Aureimonas ureilytica NS365 5013318 93 183 103973 81.0 4690 56 LDQA00000000
3 Curtobacterium citreum NS330 3454135 73 241 29468 81.4 3350 47 LDQB00000000
4 Curtobacterium luteum NS184 3586193 100 209 44951 80.2 3460 45 LDQC00000000
5 Curtobacterium oceanosedimentum NS263 3370512 97 164 44334 79.7 3206 46 LDRB00000000
6 Curtobacterium oceanosedimentum NS359 3421352 94 188 39494 79.4 3258 45 LDRC00000000
7 Enterobacter asburiae NS23 4716160 71 102 154724 89.0 4472 71 LDQD00000000
8 Enterobacter asburiae NS34 4722850 64 72 165694 88.9 4462 70 LDQE00000000
9 Enterobacter asburiae NS7 4728317 166 70 235927 89.0 4464 70 LDQF00000000
10 Enterobacter cancerogenus NS104 4884126 117 52 261552 87.7 4630 76 LDQG00000000
11 Enterobacter cancerogenus NS111 4874699 99 49 268762 87.7 4622 79 LDQH00000000
12 Enterobacter cancerogenus NS188 4889753 117 62 254143 87.8 4644 75 LDQI00000000
13 Enterobacter cancerogenus NS31 4869574 96 45 261547 87.8 4620 76 LDQJ00000000
14 Enterobacter xiangfangensis NS19 4731803 91 75 347372 88.9 4436 69 LDQK00000000
15 Enterobacter xiangfangensis NS24 4705572 98 187 109643 88.7 4444 67 LDQL00000000
16 Enterobacter xiangfangensis NS28 4736807 146 38 431385 88.9 4418 73 LDQM00000000
17 Enterobacter xiangfangensis NS29 4712167 82 129 160476 88.8 4449 73 LDQN00000000
18 Enterobacter xiangfangensis NS371 4725300 125 37 345357 88.8 4402 71 LDQO00000000
19 Enterobacter xiangfangensis NS49 4719851 128 33 371391 88.9 4401 70 LDQP00000000
20 Enterobacter xiangfangensis NS57 4730229 129 44 265382 88.9 4417 74 LDQQ00000000
21 Enterobacter xiangfangensis NS64 4723970 102 76 277091 88.8 4434 71 LDQR00000000
22 Enterobacter xiangfangensis NS75 4120285 92 60 131492 88.9 4408 72 LDQS00000000
23 Enterobacter xiangfangensis NS80 4722881 85 32 282477 88.9 4405 73 LDQT00000000
24 Enterobacter xiangfangensis RSA8 4707136 72 172 134845 88.7 4467 71 LDQU00000000
25 Exiguobacterium indicum RSA11 3083121 89 53 109567 88.0 3213 57 LDQV00000000
26 Exiguobacterium indicum RSA42 3095093 79 126 69291 87.6 3233 65 LDQW00000000
27 Kocuria kristinae RSA28 2302499 205 159 25292 76.4 2072 47 LDRD00000000
28 Kocuria kristinae RSA5 2282497 236 204 21282 75.9 2074 47 LDRE00000000
29 Kocuria kristinae SA11 2243566 194 202 19601 76.3 2043 44 LDRF00000000
30 Kocuria kristinae SA12 2217668 129 249 17427 76.0 2049 46 LDRG00000000
31 Kocuria kristinae SA13 2252040 158 233 15889 76.0 2077 44 LDRH00000000
32 Kocuria kristinae SA14 2245805 270 175 23072 76.0 1996 43 LDRI00000000
33 Kocuria kristinae SA15 2265963 210 211 19130 76.1 2061 47 LDRJ00000000
34 Leucobacter chromiiresistens NS354 2841040 101 194 37446 84.6 2618 44 LDRK00000000
35 Methylobacterium aquaticum NS228 6323349 110 487 29045 80.0 5861 67 LDRL00000000
36 Methylobacterium aquaticum NS229 6377294 110 443 30018 80.1 5907 69 LDRM00000000
37 Methylobacterium aquaticum NS230 6353803 127 384 32708 79.9 5835 65 LDRN00000000
38 Methylobacterium radiotolerans SB2 6647570 116 334 55436 81.8 6254 47 LDRO00000000
39 Methylobacterium radiotolerans SB3 6693841 110 351 55393 81.8 6361 53 LDRP00000000
40 Microbacterium oxydans NS234 4013326 114 136 89218 87.8 3976 41 LDRQ00000000
41 Microbacterium testaceum NS183 3942620 94 305 37174 84.7 3760 45 LDRR00000000
42 Microbacterium testaceum NS206 3881914 113 300 44670 84.7 3687 44 LDRS00000000
43 Microbacterium testaceum NS220 4023911 118 291 32198 82.9 3829 43 LDRT00000000
44 Microbacterium testaceum NS283 3903457 140 177 50419 86.3 3655 45 LDRU00000000
45 Microbacterium testaceum RSA3 3914164 102 222 42959 84.9 3712 45 LDRV00000000
46 Paenibacillus jamilae NS115 5586901 49 311 58412 84.5 4997 58 LDRX00000000
47 Novosphingobium barchaimii NS277 3553442 135 75 193132 84.3 3332 45 LDRW00000000
48 Pantoea ananatis NS296 4734861 69 54 193582 85.2 4439 65 LDQX00000000
49 Pantoea ananatis NS303 4733153 80 69 182398 85.3 4421 59 LDQY00000000
50 Pantoea ananatis NS311 4721638 73 174 118598 85.1 4449 64 LDQZ00000000
51 Pantoea ananatis RSA47 4738039 91 46 229877 85.2 4439 65 LDRA00000000
52 Pantoea dispersa NS215 4843865 84 35 271354 86.9 4425 67 LDRY00000000
53 Pantoea dispersa NS375 4887220 81 42 318516 86.5 4510 73 LDRZ00000000
54 Pantoea dispersa NS380 4801064 74 123 195710 86.3 4454 70 LDSA00000000
55 Pantoea dispersa NS389 4819785 73 54 228728 86.5 4420 61 LDSB00000000
56 Pantoea dispersa RSA31 4949525 90 194 266158 86.7 4607 64 LDSC00000000
57 Pantoea dispersa SA2 4906145 52 52 255271 85.8 4488 66 LDSD00000000
58 Pantoea dispersa SA3 4905368 72 83 185303 85.9 4494 65 LDSE00000000
59 Pantoea dispersa SA4 4911078 55 58 156533 85.8 4503 68 LDSF00000000
60 Pantoea dispersa SA5 4897186 77 98 190714 85.9 4500 64 LDSG00000000
61 Pantoea stewartii NS381 4693026 82 51 268280 84.7 4338 68 LDSH00000000
62 Pantoea stewartii RSA13 4766695 96 48 167594 84.4 4423 67 LDSI00000000
63 Pantoea stewartii RSA30 4760407 65 84 211952 84.3 4420 65 LDSJ00000000
64 Pantoea stewartii RSA36 4791295 139 76 285765 84.2 4451 64 LDSK00000000
65 Pseudacidovorax intermedius NS331 5547045 97 295 34362 84.5 5076 49 LDSL00000000
66 Pseudomonas parafulva NS212 4823858 147 147 107693 86.7 4359 65 LDSM00000000
67 Pseudomonas parafulva NS96 4672265 177 162 108451 87.2 4283 64 LDSN00000000
68 Pseudomonas psychrotolerans NS2 5271410 146 130 143537 86.4 4687 59 LDSO00000000
69 Pseudomonas psychrotolerans NS201 5262847 139 172 119605 86.7 4783 55 LDSP00000000
70 Pseudomonas psychrotolerans NS274 5418049 135 103 95239 86.2 4848 60 LDSQ00000000
71 Pseudomonas psychrotolerans NS337 4837497 62 192 118956 88.0 4559 59 LDSR00000000
72 Pseudomonas psychrotolerans NS376 5326810 95 136 99843 86.0 4790 60 LDSS00000000
73 Pseudomonas psychrotolerans NS383 5413173 113 174 94742 86.0 4877 55 LDST00000000
74 Pseudomonas psychrotolerans RSA46 5455836 120 197 97624 86.0 4934 59 LDSU00000000
75 Pseudomonas psychrotolerans SB11 5202479 113 232 134485 86.7 4817 59 LDSV00000000
76 Pseudomonas psychrotolerans SB14 5345440 124 169 129021 86.0 4823 61 LDSW00000000
77 Pseudomonas psychrotolerans SB18 5339762 147 173 104148 86.4 4889 59 LDSX00000000
78 Pseudomonas psychrotolerans SB5 5435284 113 171 92521 86.1 4884 60 LDSY00000000
79 Pseudomonas psychrotolerans SB8 5130436 138 116 137111 86.5 4598 60 LDSZ00000000
80 Pseudomonas psychrotolerans SB9 5283903 104 121 91801 86.7 4803 57 LDTA00000000
81 Sphingomonas endophytica NS334 3642958 164 330 58696 85.2 3506 47 LDTB00000000
82 Sphingomonas sanguinis NS258 3868819 129 346 36442 85.0 3708 45 LDTC00000000
83 Sphingomonas sanguinis NS319 4169594 110 280 33184 84.9 3912 48 LDTD00000000
84 Sphingomonas sanguinis SB4 4019921 97 226 40305 84.5 3772 49 LDTE00000000
85 Sphingomonas yabuuchiae NS355 3910679 133 190 45578 85.0 3612 49 LDTF00000000
86 Staphylococcus epidermidis SA6 2540147 111 66 227679 82.1 2443 62 LDTG00000000
87 Staphylococcus epidermidis SA8 2505031 84 181 30972 82.4 2419 49 LDTH00000000
88 Staphylococcus epidermidis SB7b 2506997 86 148 44745 82.5 2423 55 LDTI00000000
89 Staphylococcus epidermidis SB7c 2559409 118 96 109441 82.3 2485 58 LDTJ00000000
90 Staphylococcus sciuri NS1 2918429 80 127 70746 85.4 2972 54 LDTK00000000
91 Staphylococcus sciuri NS112 2878717 73 136 49833 85.3 2926 52 LDTL00000000
92 Staphylococcus sciuri NS202 2743697 84 56 93562 86.8 2757 56 LDTM00000000
93 Staphylococcus sciuri NS36 2881364 90 117 52335 85.3 2907 54 LDTN00000000
94 Staphylococcus sciuri NS44 2979824 160 164 142946 84.5 3038 55 LDTO00000000
95 Staphylococcus sciuri NS53 2897114 85 155 53334 85.3 2951 51 LDTP00000000
96 Staphylococcus sciuri RSA37 2890453 130 72 81742 85.5 2911 54 LDTQ00000000
97 Staphylococcus warneri NS346 2563869 96 87 84728 83.6 2485 50 LDTR00000000
98 Staphylococcus warneri SA10 2549551 84 145 36722 82.4 2497 53 LDTS00000000
99 Staphylococcus warneri SA9 2541660 96 77 114371 82.0 2482 56 LDTT00000000
100 Staphylococcus xylosus NS341 2842280 89 111 59876 82.2 2702 54 LDTU00000000