Table 1.
Selected representative HDAC genes for expression analysis. GenBank protein accession number and corresponding predicted common bean homologs along with location on the common bean genome.
| Gene family/class | GenBank protein accession number | Phytozome common bean CDS number | HDACs names | Location on the bean genome (chromosome) |
Corresponding model organism |
|---|---|---|---|---|---|
| RPD3/HDA1 family class I |
AAC50038 AAK0712.1 |
Phvul.009G115300.1 | PvRPD3 | 9 |
Zea mays
Oryza sativa |
| BAB10553 | Phvul.003G203800.1 | PvHDA6 | 6 | A. thaliana | |
| Class II |
NP_200915 NP 200914 |
Phvul.003G185200.1 | PvHDA18 | 3 | A. thaliana |
| Class III | AAD40129 | Phvul.001G034500.2 | PvHDA2 | 1 | A. thaliana |
| HD2 family | AAB70032 | Phvul.001G186300.1 | PvHD2 | sg0.contig 03923: 2769–5777 |
A. thaliana |
| SIR2 family | BAB09243 | Phvul.006G057700.1 | PvSRT1 | 6 | A. thaliana |