Table 2. Taxonomic assignment of the contaminant reads.

	Clustered reads	Contaminants					Undetermined reads	Genuine reads
		Fungi	Alveolata	Other Amoebozoa	Other eukaryotes	Total
Acanthamoeba	2,321	44	27	117	27	215 (9%)	41 (2%)	2,065 (89%)
Myxomycetes	3,401	82	186	15	12	295 (9%)	215 (6%)	2,891 (85%)
Total	5,722	126	213	132	39	510 (9%)	256 (4%)	4,956 (87%)