Table 5. Primers and PCR settings used in this study.
Name | sequence 5′-3′ | specificity | reference |
---|---|---|---|
First PCR, forward1 | |||
S1 | AACCTGGTTGATCCTGCC | non-specific | Fiore-Donno et al. (2008) |
First PCR, reverse | |||
SRAca28 | CCAATTACAAGACTCTTRTCGAG | Acanthamoeba | this work |
SR19Dark | GTCCTCTAATTGTTACTCGAD | dark-spored Myxomycetes | this work |
Second, semi-nested PCR, forward (reverse primers as before)2 | |||
SFAca22 | CGGYGAGACTGCGGATGG | Acanthamoeba | this work |
SF2Dark | GTTGATCCTGCCAGTAGTGT | dark-spored Myxomycetes | this work |
140 cycles, 30 s at 95 °C, 60 s at 54.8 °C, 120 s at 72 °C, and a final elongation step of 5 min at 72 °C.
235 cycles, 30 s at 95 °C, 60 s at 54 °C, 120 s at 72 °C, and a final elongation step of 5 min at 72 °C.