| Data sharing and analysis platform to support regional and international collaborations |
Integrated Breeding Platform (IBP): https://www.integratedbreeding.net
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Auth, Data Store, Discovery Environment, Atmosphere |
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Genomes to Fields Initiative: http://www.genomes2fields.org/
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| Large-scale image data management |
120+ Herbariums, part of NEVP (New England Vasculature Plant) and SERNEC (Southeast Region Network of expertise and collections) consortium: http://nevp.org/participants, http://sernec.appstate.edu/
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Auth, Data Store, Bisque |
| High-throughput Image based phenotyping |
15 laboratories in the United States and Mexico collaboratively working with robotic data acquisition systems and cloud-based analysis using customized virtual machines (appliances) |
Auth, Data Store, Atmosphere |
| High-throughput Next Generation Sequencing analysis pipelines |
Workflows with 100+ TBs of data, Millions of CPU hours |
Auth, Data Store, Discovery Environment, Atmosphere, Pegasus [3], Science API |
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iAnimal variant calling workflows |
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Soybean Knowledgebase (SoyKB): http://soykb.org/
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| Community portals for data dissemination |
Integrated large-scale data sets and analysis |
Auth, Data Store, Discovery Environment |
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iMicrobe (includes legacy CAMERA project data): http://imicrobe.us
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One thousand plants transcriptome: http://onekp.com
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| Learning Material, training opportunities |
Undergraduate course work: http://www.iplantcollaborative.org/blog/news/class-cloud
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DNA subway, Atmosphere, Discovery Environment, Science API |
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Graduate Bioinformatics courses: http://brendelgroup.org/teaching/2014/CGSL14Sschedule.php
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Community organized workshops and data clinics: http://www.idsnews.com/article/2015/08/iu-biology-hosts-clinic
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Software and Data Carpentry with iPlant: http://dib-training.readthedocs.org/en/pub/2015-09-iplant.html
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| CISE (Computer Information Science and Engineering) engagement |
Jet Stream: Self-provisioned cloud environment: http://jetstream-cloud.org/
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Atmosphere, Data Store, Science API |
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Syndicate: Content Delivery Network (CDN) for science data: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1541318
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Agave: API driven platform for reproducible science: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1450459
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