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. 2016 Jan 11;11(1):e0146550. doi: 10.1371/journal.pone.0146550

Table 4. Relevant GO biological processes in blood as affected by selection for RFI.

GO terma Genesb
Overexpressed genes in low RFI line compared with high RFI line
GO:0006414 Translational elongation RPSA, EEF1A1, RPL14, RPL15, RPL35, RPL23A, SELT, RPS3, RPS25, RPS18, RPL6, RPS13, RPL10, RPL10A, RPS21, UBA52, RPS23
Underexpressed genes in low RFI line compared with high RFI line
GO:0006952 Defense response KYNU, NMI, FGR, LY86, CCR1, CLU, TLR1, TLR2, CXCR2, PRDX1, IL10, IL10RB, BCL2, TAP1, CSF3R, NFATC4, CD24, THBS1, BLNK, F12, TLR10, PTGER3, LY96, BECN1, HCK, IL1RN, HLA-C, C4BPB, HLA-B, CD40, C4BPA, STAT3, CD84, CD83, CD55, CD19, HIST2H2BE, CLEC7A, CLEC5A, CD14
GO:0045321 Leukocyte activation ZBTB32, BST2, TLR1, TLR2, CXCR2, CD40, TPD52, SKAP2, IL10, CBLB, PKNOX1, PSEN1, ULBP1, BCL2, BCL11A, MS4A1, ADAM17, BCL6, CLEC7A, CD24, SYK, BLNK, ADAM9
GO:0050727 Regulation of inflammatory response F12, ADRB2, PTGS2, SERPINF1, TGM2, CMA1, BCL6, JAK2, CD24, IL10
GO:0044092 Negative regulation of molecular function NF1, PKIG, NPR3, PKIA, PROX1, PDCD4, PSMB8, PSMB9, SH3BP5, SPRY2, ADRB2, PSEN1, PSME2, CDKN2D, RGS4, PSMA3, UBC, SORT1, JAK2, UBE2D1, BUB3, DHCR24
GO:0019882 Antigen processing and presentation HLA-H, ULBP1, HLA-DRB3, HLA-A, ERAP1, HLA-C, CD1A, HLA-B, HLA-DOB, PSMB8, PSMB9
GO:0006916 Anti-apoptosis BECN1, SPHK1, CLU, BIRC3, ANXA4, IL10, TNFSF13B, PSEN1, BCL2, CDKN2D, TGM2, UBC, ADAM17, THBS1, DHCR24
GO:0002684 Positive regulation of immune system process CLU, TLR2, C4BPB, CD40, C4BPA, CD83, CBLB, CD55, CD19, TNFSF13B, PSEN1, ADAM17, BCL6, CD24, CLEC7A, THBS1, SYK
GO:0030155 Regulation of cell adhesion VAV3, GSN, BCL2, NF1, CCDC80, TGM2, BCL6, JAK2, CD24, THBS1, TPM1, ADAM9

aGene ontology (GO) identification number and term of the biological process. Benjamini-Hochberg adjusted P-value varied from 0.1 and 8.10−05.

bUnique genes included in each pathway.