Table 5. Accuracy of GEBVs assessed by five-fold cross-validation based on a combined dataset consisting of five scallop families.
r(y, EBV) |
r(TBV, EBV)b |
|||||
---|---|---|---|---|---|---|
SH | SL | SW | SH | SL | SW | |
LASSO | 0.20 (0.09)a | 0.27(0.13) | 0.15 (0.10) | 0.29 (0.13) | 0.39 (0.19) | 0.25 (0.17) |
RR-BLUP | 0.30 (0.16) | 0.37 (0.09) | 0.18 (0.08) | 0.43 (0.23) | 0.53 (0.13) | 0.30 (0.13) |
BL | 0.31 (0.16) | 0.36 (0.08) | 0.15 (0.07) | 0.44 (0.23) | 0.51 (0.12) | 0.25 (0.12) |
G-BLUP | 0.37 (0.08) | 0.32 (0.09) | 0.33 (0.09) | 0.53 (0.12) | 0.46 (0.13) | 0.55 (0.15) |
BayesA | 0.40 (0.07) | 0.33 (0.08) | 0.35 (0.09) | 0.57 (0.10) | 0.47 (0.12) | 0.58 (0.15) |
BayesB | 0.40 (0.07) | 0.34 (0.07) | 0.36 (0.08) | 0.57 (0.10) | 0.49 (0.10) | 0.60 (0.13) |
aStandard error.
bThe correlation between EBV and TBV is calculated as the r(y, EBV) divided by the square root of the heritability of a given trait.