Table 3.
Top SNPs from GEMMA mixed model analysis of Sequenom genotyping data in the validation cohort
| Chr | bp | P-value likelihood ratio test | Annotation |
|---|---|---|---|
| 14 | 18198820 | 1.41E-03 | Nonsynonymous exon 9 GABRA6 |
| 3 | 107352236 | 1.57E-03 | Nonsynonymous exon 20 PROM1 |
| 1 | 140205123 | 1.89E-03 | Nonsynonymous exon 20 ATP8B4 |
| 1 | 139685697 | 2.82E-03 | Nonsynonymous exon 32 TRPM7 |
| 14 | 16830511 | 5.34E-03 | Intron HMMR |
| 14 | 16840478 | 8.05E-03 | Intron NUDCD2 |
| 4 | 5924012 | 9.70E-03 | Nonsynonymous exon 4 ATXN7L1 |
| 21 | 48664783 | 1.13E-02 | Intron CTNND2 |
| 10 | 57209370 | 1.83E-02 | Downstream PDSS2 |
| 5 | 77536297 | 1.89E-02 | Nonsynonymous exon 8 CLCA2 |
| 5 | 78709303 | 2.27E-02 | Nonsynonymous exon 4 WDR63 |
| 1 | 139944477 | 4.16E-02 | Nonsynonymous exon 10 SLC27A2 |
| 10 | 56817838 | 4.47E-02 | Intron QRSL1 |
| 14 | 37281732 | 4.93E-02 | Downstrream SPATA24 |
Chr chromosome, bp base pair