Table 1.

Distribution of cells with PCDH11X/Y transcripts: amount of cells with PCDH11X/Y signals

Sample	Tissue	Gene	Gender	Cells without signals	Cells with X = 1	Cells with Y = 1	Cells with X + Y > = 2	Cells with X > 1 Y = 0	Cells with Y > 1 X = 0	Total cell counts
E27_S44	SC	PCDH11	Female	3442	470	1	0	89	0	4002
E31_S91	SC	PCDH11	Female	3358	190	4	0	23	1	3576
E49_S82	SC	PCDH11	Female	4793	252	18	0	34	0	5097
E33_S50	MO	PCDH11	Female	13,517	1479	10	6	321	0	15,333
E34_S20	MO	PCDH11	Female	12,485	1069	0	0	192	0	13,746
E33_S63	MO	PCDH11	Female	16,189	1042	45	1	113	0	17,390
E34_S63	MO	PCDH11	Female	25,784	1452	85	13	151	0	27,485
E32_S53	SC	PCDH11	Male	4915	106	61	10	5	14	5111
E32_S84	SC	PCDH11	Male	4319	257	269	45	31	18	4939
E45_S75	MO	PCDH11	Male	14,214	895	427	108	87	28	15,759
E61_S49	MO	PCDH11	Male	5944	636	78	21	122	2	6803
E41_S58	MO	PCDH11	Male	6824	409	99	13	41	0	7386
E45_S50	MO	PCDH11	Male	16,881	1553	948	240	175	85	19,882
E58_S82	MO	PCDH11	Male	9437	1122	356	160	241	15	11,331
E61_S72	MO	PCDH11	Male	6848	373	194	17	34	6	7472
E47_S71	Midbrain	PCDH11	Male	9635	683	172	58	53	9	10,610
E45_S330	Midbrain	PCDH11	Male	15,907	595	369	43	62	17	16,993
E47_S72	Midbrain	PCDH11	Male	8758	468	135	18	47	7	9433
E45_S329	Midbrain	PCDH11	Male	24,012	1259	555	70	137	28	26,061

Summary of signal and cell counts from the padlock probing in situ experiments. The table shows the total number of signals for each gene, and the total number of cells identified by CellProfiler, for each sample hybridized simultaneously with padlock probes for two X and Y genes