Table 2.
Bacterial composition of the studied abscesses
| Sample ID (clones per sample) | Best blast hit* (accession number: percentage of similitude) | Previously reported source† |
|---|---|---|
| N-138 (1) | Uncultured (KF842135: 96) | Fecal sample |
| Hymenobacter (AY647897: 95) | ||
| A-115 (5) | Uncultured (KF842135: 100) | Fecal sample |
| Ganulicatella (FR822389: 99) | ||
| A-157 (1), A-142 (2), N-117 (1) | Sediminibacterium (FJ915149: 100) | Soil, water |
| A-117 (1) | Janthinobacterium (KF113922: 99) | Human pathogen |
| N-81 (1), N138 (9) | Uncultured (HM299064: 99) | Oropharyngeal pathogen |
| Fusobacterium (KF44237: 99) | ||
| A-115 (1) | Gibberella (AM946177: 100) | Associated to fungi |
| N-117 (1) | Uncultured (AJ609013: 99) | Soil |
| Sphingomonas (FJ362389: 98) | ||
| N-117 (1) | Propionibacterium (JQ194169: 100) | Soil, water |
| N-138 (11) | Bacteroides sp. 1. (KF842135: 100) | Human pathogen |
| N-138 (2) | Bacteroides sp. 2. (NR074839: 100) | Human pathogen |
| N-117 (1), N-140 (1) | Bacteroidetes (GU409054: 100) | Human pathogen |
| N-117 (1) | Pseudomonas sp. 1. (KF760556: 99) | Environmental |
| A-142 (5) A-157 (1) | Pseudomonas sp. 2. (KF263567:99) | Environmental |
| A-141 (3), A-157 (7) | Ralstonia (KJ149172: 100) | Human pathogen |
| N-140 (3) | Prevotella (JF214727: 99) | Human pathogen |
| A-69 (18), A-156 (6) | Klebsiella (KC692181: 99) | Human pathogen |
| N-117 (1) | Staphylococcus (KF575165: 100) | Human pathogen |
| A-115 (1) | Streptococcus sp.1 (GU374045: 99) | Human pathogen |
| A-115 (2) | Streptococcus sp.2 (GU797873: 99) | Human pathogen |
| A-115 (2) | Streptococcus sp.3 (GU907525: 99) | Human pathogen |
| A-115 (2) | Streptococcus sp.4 (HM075591: 99) | Human pathogen |
| N-81 (9), N-138 (4) | Streptococcus sp.5 (NR102797: 100) | Human pathogen |
| N-77 (22) | Streptococcus sp.6 (AF145244: 99) | Human pathogen |
| A-115 (5) | Uncultured sp.1 (HM268877: 99) | Skin pathogen |
| A-115 (2) | Uncultured sp.2 (JX473212: 100) | Fecal |
| A-115 (3) | Uncultured sp.3 (AY479308: 99) | Fecal |
*
Refers to the genus established by the best blast hit. When uncultured bacteria were the best blast hit, the second best blast hit was used (bold).
†
Source(s) where the genus has been previously described.