TABLE 3.

Number of genes associated with general COG functional categories in the T. gabretensis S55^T genome

COG category	Code	No. of genes	% of total genes
Amino acid transport and metabolism	E	224	6.6
Carbohydrate transport and metabolism	G	227	6.7
Cell cycle control, cell division, and chromosome partitioning	D	29	0.9
Cell motility	N	54	1.6
Cell wall/membrane/envelope biogenesis	M	193	5.7
Coenzyme transport and metabolism	H	141	4.2
Cytoskeleton	Z	1	0.03
Defense mechanisms	V	144	4.2
Energy production and conversion	C	143	4.2
Extracellular structures	W	14	0.4
Function unknown	S	135	4.0
General function prediction only	R	317	9.4
Inorganic ion transport and metabolism	P	91	2.7
Intracellular trafficking, secretion, and vesicular transport	U	58	1.7
Lipid transport and metabolism	I	116	3.4
Mobilome: prophages and transposons	X	19	0.6
Nucleotide transport and metabolism	F	74	2.2
Posttranslational modification, protein turnover, and chaperones	O	107	3.2
Replication, recombination, and repair	L	80	2.4
Secondary metabolite biosynthesis, transport, and catabolism	Q	80	2.4
Signal transduction mechanisms	T	125	3.7
Transcription	K	211	6.2
Translation, ribosomal structure, and biogenesis	J	175	5.2
Not in COGs		632	18.6