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. 2016 Jan 13;12(1):e1005756. doi: 10.1371/journal.pgen.1005756

Table 1. MLH1 exon 10 variants analyzed in this study.

MLH1 exon 10 spans nucleotide positions c.791 to c.884. The first and the last 3 exonic positions (delineated by the dashed line) are an integral part of the 3’ss and 5’ss consensus sequences, respectively. LOVD, Leiden Open Variation Database; dbSNP, the Single Nucleotide Polymorphism database; UMD-MLH1, Universal Mutation Database-MLH1; Swiss-Prot, the European protein sequence database. Variant classification was retrieved from the LOVD database and refers to the 5-tier system used by the InSiGHT Variant Interpretation Committee (http://insight-group.org/variants/classifications/) as follows: 1, not pathogenic; 2, likely not pathogenic; 3, uncertain; (also called VUS for variants of unknown significance); 4, likely pathogenic; 5, pathogenic; n/a, not available.

Position in MLH1 exon 10 Nucleotide variant Predicted amino acid change Databases Variant classification
+1 c.791A>G p.His264Arg LOVD, dbSNP 3
+3 c.793C>A p.Arg265Ser LOVD, dbSNP 4
+3 c.793C>T p.Arg265Cys LOVD, dbSNP, UMD-MLH1 5
+4 c.794G>A p.Arg265His LOVD, dbSNP, UMD-MLH1 3
+13 c.803A>G p.Glu268Gly LOVD, dbSNP 1
+16 c.806C>G p.Ser269* LOVD, dbSNP, UMD-MLH1 5
+24 c.814T>G p.Leu272Val LOVD, dbSNP 3
+25 c.815T>C p.Leu272Ser LOVD, dbSNP n/a
+50 c.840T>A p.Tyr280* LOVD, dbSNP 5
+52 c.842C>T p.Ala281Val LOVD, dbSNP, UMD-MLH1 5
+55 c.845C>G p.Ala282Gly LOVD, dbSNP, Swiss-Prot 2
+61 c.851T>A p.Leu284* LOVD, dbSNP, UMD-MLH1 5
+65 c.855C>T p. = (p.Pro285Pro) LOVD, dbSNP n/a
+66 c.856A>C p.Lys286Gln LOVD, dbSNP 3
+71 c.861C>T p. = (p.Asn287Asn) LOVD, dbSNP 3
+85 c.875T>C p.Leu292Pro LOVD, dbSNP, Swiss-Prot 3
+92 c.882C>G p. = (p.Leu294Leu) LOVD 3
+92 c.882C>T p. = (p.Leu294Leu) LOVD, dbSNP, UMD-MLH1 5
+93 c.883A>C p.Ser295Arg LOVD, dbSNP 5
+93 c.883A>G p.Ser295Gly LOVD, dbSNP 5
+94 c.884G>A p.Ser295Asn LOVD, dbSNP 5
+94 c.884G>C p.Ser295Thr LOVD, dbSNP, Swiss-Prot 4