Table 4.
Differential expression patterns of cell wall-related genes in the tomato LAZ and FAZ.
| Gene ID | Gene name | Nucleotide Accession number | NCBI description | Expression level | Log2(Ratio) | |
|---|---|---|---|---|---|---|
| LAZ | FAZ | |||||
| POLYGALACTURONASES | ||||||
| Solyc02g067630 | TAPG1 | AF001000 | Polygalacturonase 1 | 93,779 | 65,322 | 0.5 |
| Solyc02g067640 | TAPG2 | AF001001 | Polygalacturonase 2 | 19,182 | 58,301 | −1.6 |
| Solyc02g067650 | TAPG3 | AF000999 | Polygalacturonase 3 | 661 | 399 | 0.7 |
| Solyc12g096750 | TAPG4 | AF001002 | Polygalacturonase 4 | 93,458 | 298,246 | −1.7 |
| Solyc12g096740 | TAPG5 | AF001003 | Polygalacturonase 5 | 40,338 | 169,016 | −2.1 |
| Solyc12g019180 | AF072732 | Polygalacturonase 7 | 819 | 37 | 4.5 | |
| Solyc12g096730 | TPG6 | AF029230 | Polygalacturonase | 258 | 123 | 1.1 |
| Solyc03g116500 | XOPG1 | AF138858 | Polygalacturonase | 8036 | 2546 | 1.7 |
| Solyc08g060970 | PGcat | AF118567 | Polygalacturonase | 15,150 | 10,785 | 0.5 |
| Solyc04g015530 | PS-2 | EU111748 | Dehiscence polygalacturonase | 0 | 2774 | 0.0 |
| Solyc10g080210 | PG-2a | X04583 | Polygalacturonase-2a | 0 | 11 | 0.0 |
| Solyc07g065090 | L26529 | Polygalacturonase inhibitor protein | 49,824 | 52,806 | −0.1 | |
| CELLULASES | ||||||
| Solyc08g081620 | Cel1 | U13054 | Endo-1,4-beta-glucanase | 7882 | 27,048 | −1.8 |
| Solyc09g010210 | Cel2 | U13055 | Endo-1,4-beta-glucanase | 33,292 | 4618 | 2.8 |
| Solyc01g102580 | Cel3 | U78526 | Endo-1,4-beta-glucanase | 31,216 | 37,492 | −0.3 |
| Solyc09g075360 | Cel4 | U20590 | Endo-1,4-beta-glucanase | 3210 | 3800 | −0.2 |
| Solyc08g083210 | Cel5 | AF077339 | Endo-1,4-beta-glucanase | 256,927 | 10,075 | 4.7 |
| Solyc05g005080 | Cel6 | NA | Endo-1,4-beta-glucanase | 87,695 | 30,178 | 1.5 |
| Solyc11g040340 | Cel7 | Y11268 | Endo-1,4-beta-glucanase | 14,458 | 1561 | 3.2 |
| Solyc08g082250 | Cel8 | AF098292 | Endo-1,4-beta-glucanase | 47,547 | 7409 | 2.7 |
| XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASES | ||||||
| Solyc01g099630 | SlXTH1 | D16456 | Endo-xyloglucan transferase | 299,193 | 15,747 | 4.2 |
| Solyc07g009380 | SlXTH2 | AF176776 | Xyloglucan endotransglycosylase lexet2 | 19,890 | 3315 | 2.6 |
| Solyc03g093080 | SlXTH3 | AY497476 | Xyloglucan endotransglucosylase-hydrolase XTH3 | 11,463 | 7902 | 0.5 |
| Solyc03g093110 | SlXTH3 | AY497476 | Xyloglucan endotransglucosylase-hydrolase XTH3 | 10,544 | 6556 | 0.7 |
| Solyc03g093120 | SlXTH3 | AY497476 | Xyloglucan endotransglucosylase-hydrolase XTH3 | 11,633 | 6461 | 0.8 |
| Solyc03g093130 | SlXTH3 | AY497476 | Xyloglucan endotransglucosylase-hydrolase XTH3 | 12,099 | 16,273 | −0.4 |
| Solyc11g065600 | SlXTH4 | AF186777 | Xyloglucan endotransglycosylase | 83 | 795 | −3.3 |
| Solyc01g081060 | SlXTH5 | AY497475 | Xyloglucan endotransglucosylase-hydrolase XTH5 | 32,612 | 54,930 | −0.8 |
| Solyc11g066270 | SlXTH6 | AY497477 | xyloglucan endotransglucosylase-hydrolase XTH6 | 30,396 | 4588 | 2.7 |
| Solyc02g091920 | SlXTH7 | AY497478 | Xyloglucan endotransglucosylase-hydrolase XTH7 | 11,361 | 16,524 | −0.5 |
| Solyc04g008210 | SlXTH8 | AB036338 | endoxyloglucan transferase | 14,512 | 18,467 | −0.3 |
| Solyc12g011030 | SlXTH9 | AY497479 | xyloglucan endotransglucosylase-hydrolase XTH9 | 25,489 | 12,237 | 1.1 |
| Solyc07g056000 | SlXTH10 | X82684 | Xyloglycan endo-transglycosylase | 21,410 | 28,794 | −0.4 |
| Solyc12g017240 | SlXTH11 | X82685 | Xyloglucan endo-transglycosylase | 6763 | 3776 | 0.8 |
| Solyc07g052980 | SlXTH16 | DQ098654 | Xyloglucan endotransglucosylase-hydrolase XTH16 | 43,636 | 186,375 | −2.1 |
| EXPANSINS | ||||||
| Solyc01g090810 | LeEXPB1 | DQ234354 | Beta-expansin precursor | 2151 | 0 | |
| Solyc03g093390 | LeEXPB2 | DQ205653 | Beta expansin precursor (EXPB2) | 102 | 17 | 2.6 |
| Solyc05g007830 | AC154033 | Alpha-expansin 1 precursor | 172,124 | 9441 | 4.2 | |
| Solyc01g112000 | LeEXLA1 | DQ178133 | Expansin-like protein precursor (EXLA1) | 46,270 | 23,553 | 1.0 |
| Solyc06g051800 | LeEXP1 | U82123 | Fruit ripening regulated expansin | 74,430 | 3752 | 4.3 |
| Solyc06g049050 | LeEXP2 | AF096776 | Expansin LeEXP2 | 35,951 | 10,479 | 1.8 |
| Solyc03g031840 | EXPA3 | AF059487 | Expansin precursor (EXPA3) | 18,068 | 12,366 | 0.5 |
| Solyc09g010860 | EXPA4 | AF059488 | Expansin precursor (EXPA4) | 5088 | 3355 | 0.6 |
| Solyc02g088100 | EXPA5 | AF059489 | Expansin precursor (EXPA5) | 67,484 | 21,494 | 1.7 |
| Solyc10g086520 | EXPA6 | AF059490 | Expansin (EXPA6) | 6244 | 253 | 4.6 |
| Solyc03g115300 | EXPA7 | AF059491 | Expansin | 112 | 75 | 0.6 |
| Solyc12g089380 | EXPA8 | AF184232 | Expansin EXPA8 | 396 | 75 | 2.4 |
| Solyc06g005560 | EXP9 | AJ243340 | Expansin9 | 60,173 | 13,676 | 2.1 |
| Solyc03g115890 | EXPA10 | AF184233 | Expansin EXPA10 | 1183 | 349 | 1.8 |
| Solyc04g081870 | Exp11 | AF218775 | Expansin precursor (Exp11) | 81,922 | 3546 | 4.5 |
| Solyc06g076220 | Exp18 | AJ004997 | Expansin18 | 99,291 | 2685 | 5.2 |