Table 1. Overview of the two DNA methylation data sets.
Caucasian (Data Set 1) | Hispanic (Data Set 2) | |||||
---|---|---|---|---|---|---|
P-value | PD | control | P-value | PD | control | |
Sample size | 289 | 219 | 46 | 38 | ||
No. Female | 0.47 | 125 | 102 | 0.05 | 14 | 20 |
Smoking Status | 0.013 | 0.21 | ||||
Smoking: current | 15 | 13 | 3 | 4 | ||
Smoking: former | 120 | 118 | 21 | 6 | ||
Smoking: never | 154 | 88 | 22 | 8 | ||
P-value | mean (SE), min, max | mean (SE), min, max | P-value | mean (SE), min, max | mean (SE), min, max | |
Smoking: total pack years | 0.0051 | 11.4 (1.3),0,175 | 14.8 (1.6),0,125 | 0.65 | 5.7 (2),0,73 | 7 (2.9),0,39 |
Age | 0.053 | 71 (0.6),37,91 | 68 (0.8),35,92 | 0.60 | 67.3 (1.6),37,83 | 65 (2.1),36,86 |
Year Born | 0.14 | 1932 (0.6),1915,1966 | 1935 (0.8),1912,1969 | 0.27 | 1938 (2),1920,1964 | 1944 (4),1918,1969 |
Education: no. of years in school | 0.0085 | 14.1 (0.2),6,30 | 14.8 (0.2),5,27 | 0.16 | 9.6 (0.72),0,20 | 11.2 (1),1,19 |
PD Family History | 0.16 | 0.15 (0.021),0,1 | 0.11 (0.021),0,1 | 0.30 | 0.15 (0.05),0,1 | 0.6 (0.056),0,1 |
Caffeinated Coffee: lifetime weighted ave. (cup/day) | 0.21 | 1.8 (0.12),0,14 | 2.2 (0.18),0,19 | 0.54 | 1.6 (0.48),0,20 | 1.3 (0.29),0,4 |
Organophospate count (residential+occuputation) | 2.8×10–8 | 9 (0.59),0,46 | 4.9 (0.47),0,41 | 1.7×10–3 | 13.3 (1.63),0,37 | 5.9 (2.4),0,30 |
Year diagnosed with PD | 2001 (0.3),1998,2007 | 2002 (0.3),1998,2006 | ||||
Levodopa Medication status | 0.7 (0.03) | 0.67 (0.v07) | ||||
Levodopa mg/day | 350 (16),0,2300 | 369 (41),0,1020 |
Data sets 1 and 2 are comprised of Caucasians (non-Hispanic whites) and Hispanics, respectively. The p-value resulted from relating the respective variables to PD status using a non-parametric group comparison test (Kruskal Wallis test) or Fisher's exact test (for categorical variables).