Table 2. Bacterial and fungal isolates used for testing amplification specificity and their corresponding qPCR and LAMP resultsa.
| Species/Isolates | # of isolates | Host | qPCR | LAMP |
|---|---|---|---|---|
| Alternaria spp. | 1 | Strawberry | 40.0 | 45.0 |
| Botrytis cinerea | 3 | Strawberry | 40.0 | 45.0 |
| Cercospora spp. | 1 | Strawberry | 40.0 | 45.0 |
| Colletotrichum acutatum | 1 | Strawberry | 40.0 | 45.0 |
| Fusarium oxysporum | 1 | Strawberry | 40.0 | 45.0 |
| Gnomonia spp. | 2 | Strawberry | 39.0 | 45.0 |
| Hainesia lythri | 1 | Strawberry | 38.5 | 45.0 |
| Macrophomina phaseoli | 2 | Strawberry | 39.7 | 45.0 |
| Pestalotiopsis spp. | 2 | Strawberry | 40.0 | 45.0 |
| Phomopsis obscurans | 3 | Strawberry | 40.0 | 45.0 |
| Phytophthora cactorum | 3 | Strawberry | 40.0 | 45.0 |
| Pseudomonas cichorii | 1 | Tomato | 40.0 | 41.1 |
| Pseudomonas putida | 1 | Tomato | 37.7 | 41.5 |
| Pseudomonas syringae pv. syringae | 1 | Bean | 37.5 | 45.0 |
| Pseudomonas syringae pv. tomato | 1 | Tomato | 40.0 | 45.0 |
| Pseudomonas viridiflava | 1 | Tomato | 37.8 | 39.9 |
| Psuedomonas spp. | 4 | Strawberry | 37.7 | 45.0 |
| Psuedomonas syringae | 1 | Strawberry | 38.0 | 40.0 |
| Pythium irregulare | 1 | Strawberry | 40.0 | 45.0 |
| Verticillium dahliae | 3 | Strawberry | 39.1 | 45.0 |
| Xanthomonas albilineans | 1 | Sugar cane | 38.2 | 45.0 |
| Xanthomonas alfalfae | 1 | Citrus | 40.0 | 40.5 |
| Xanthomonas arboricola-pruni | 1 | Peach | 38.7 | 39.7 |
| Xanthomonas axonopodis pv. dieffenbachiae | 1 | Anthurium | 39.1 | 40.8 |
| Xanthomonas campestris pv. citri | 1 | Citrus | 40.0 | 45.0 |
| Xanthomonas campestris pv. campestris | 1 | Cabbage | 38.1 | 41.5 |
| Xanthomonas campestris pv. euvesicatoria R4 | 1 | Pepper | 39.9 | 45.0 |
| Xanthomonas codiaei | 1 | Croton | 38.3 | 40.0 |
| Xanthomonas fragariae | 40 | Strawberry | 21.8 | 7.9 |
| Xanthomonas fuscans | 1 | Bean | 38.8 | 39.3 |
| Xanthomonas hortorum pv. pelargonii | 1 | Geranium | 37.3 | 40.6 |
| Xanthomonas hyacinthi | 1 | Hyacinthus | 37.7 | 44.7 |
| Xanthomonas perforans T4 | 1 | Tomato | 40.0 | 45.0 |
| Xanthomonas pisi | 1 | Pea | 37.4 | 39.1 |
| Xanthomonas spp. | 1 | Unknown | 39.2 | 40.3 |
| Xanthomonas translucens | 1 | Wheat | 37.2 | 41.2 |
| Xanthomonas vesicatoria | 1 | Tomato | 39.4 | 40.3 |
| Xanthomonas vesicatoria | 1 | Pepper | 39.0 | 39.8 |
| Unclassified | 15 | Strawberry | 40.0 | 45.0 |
a qPCR and LAMP data are presented as the means of the Ct and Tt values per microbial species/isolates for qPCR and LAMP, respectively.