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. Author manuscript; available in PMC: 2017 Jan 1.
Published in final edited form as: J Mol Graph Model. 2015 Nov 17;63:22–28. doi: 10.1016/j.jmgm.2015.11.008

Table 1.

Classification Performance of SVM Models Developed Based on Dataset Train1 with Various Descriptor Sets

MOE Schrödinger ISIDA fragments
10-fold cross-validation (61 actives and 73 inactives)
Parameters C = 5
γ = 0.1
C = 20
γ = 0.1
C = 40
γ = 0.1
Accuracy 95.44% 95.44% 91.65%
Sensitivity 96.72% 95.08% 88.52%
Specificity 94.52% 95.89% 94.52%
Prediction on external test set Test1 (41 actives and 49 inactives)
Accuracy 94.44% 90.00% 91.11%
Sensitivity 95.12% 87.80% 87.80%
Specificity 93.88% 91.84% 93.88%
Prediction on external test set DBB (284 weak actives)
Accuracy 18.31% 17.61% 22.18%
Prediction on external test set DBC (847 inactives)
Accuracy 99.65% 99.29% 96.81%