. Author manuscript; available in PMC: 2017 Feb 1.

Published in final edited form as: J Affect Disord. 2015 Nov 17;191:123–131. doi: 10.1016/j.jad.2015.11.012

Table 2.

Estimates for the Top Five SNPs from the QTL-specific Association Analysis in (a) the Entire Sample and (b) the Multiplex MDD Pedigree for the Continuous Depression Score.

Entire Sample
SNP	χ²	p-value	β	Variance Explained	MAF	HWE p-value
rs11245316	11.28	0.000783	0.15	0.009	0.213	0.88
rs3884528	9.09	0.002565	-0.11	0.008	0.466	0.18
rs4578341	7.51	0.006127	0.12	0.008	0.219	0.98
rs1123988	7.38	0.00658	0.11	0.007	0.006	0.86
rs859556	7.30	0.00688	-0.58	0.006	0.006	0.96
Multiplex Pedigree
rs7913161	17.84	0.000024	0.69	0.150	0.163	0.38
rs4995180	16.19	0.000057	1.35	0.139	0.025	0.45
rs7906808	15.35	0.000089	1.95	0.133	0.006	0.66
rs7906939	14.28	0.000158	1.52	0.131	0.010	0.69
rs7095366	14.17	0.000167	1.18	0.116	0.021	0.51