Table 2.

The differences on ancestral proportions of individuals between supervised ADMIXTURE and the eigenanalysis for the HapMap Phase 3 data.

Pop.	PCA – ADMIXTURE			EIGMIX – ADMIXTURE
	mean ± sd			mean ± sd
	% CEU	% CHB+JPT	% YRI	% CEU	% CHB+JPT	% YRI
ASW	0.30 ± 0.75	−0.29 ± 1.11	−0.01 ± 0.90	0.18 ± 1.09	−0.27 ± 1.24	0.09 ± 0.73
CHD	−1.10 ± 1.65	1.09 ± 1.66	0.01 ± 1.15	−1.16 ± 1.82	1.11 ± 1.70	0.05 ± 1.34
GIH	−4.15 ± 0.85	0.42 ± 0.57	3.74 ± 0.87	−3.39 ± 0.84	−0.60 ± 0.74	3.98 ± 1.12
LWK	1.50 ± 1.33	0.24 ± 1.22	−1.74 ± 1.25	0.86 ± 1.42	−0.02 ± 1.35	−0.84 ± 1.03
MEX	−0.62 ± 0.70	0.23 ± 0.57	0.40 ± 0.75	−0.31 ± 0.91	0.02 ± 0.83	0.29 ± 1.01
MKK	1.60 ± 0.85	0.61 ± 1.10	−2.21 ± 0.77	0.72 ± 1.07	0.33 ± 1.03	−1.05 ± 0.66
TSI	−1.07 ± 1.74	−0.78 ± 1.69	1.84 ± 1.12	−0.85 ± 1.73	−1.14 ± 1.80	1.99 ± 1.32