Table 1.
PCR primer sequence, annealing temperature, and product size, as well as restriction enzyme used and band sizes obtained after digestion, for genotyping of the polymorphisms
SNP | Primer sequence | Annealing temperature (°C) | PCR product size (bp) | Restriction enzyme | Genotype (bp) | References |
---|---|---|---|---|---|---|
rs2243250 | 5′-TAAACTTGGGAGAACATGGT-3′ | 52 | 195 | Avall | TT: 195 | 15 |
5′-TGGGGAAAGATAGAGTAATA-3′ | CT: 195+176+19 | |||||
CC: 176+19 | ||||||
rs10499563 | 5′-AGGGAAAGCAGGTTATCAAA-3′ | 61 | 424 | Taal | TT: 424 | 16 |
5′-AGTGGCTTCAGGGAGACTAA-3′ | TC: 424+320+104 | |||||
CC: 320+104 | ||||||
rs4073 | 5′-ATCTTGTTCTAACACCTGCCACTCT-3′ | 59 | 121 | Munl | TT: 121 | 17 |
5′-TAAAATACTGAAGCTCCACAATTTGG-3′ | TA: 121+82+39 | |||||
AA: 82+39 | ||||||
rs2233406 | 5′-GGTCCTTAAGGTCCAATCG-3′ | 62 | 200 | Bfal | CC: 180+20 | 18 |
5′-GTTGTGGATACCTTGCACTA-3′ | CT: 200+180+20 | |||||
TT: 200 | ||||||
rs3138053 | 5′-GGTCCTTAAGGTCCAATCG-3′ | 62 | 200 | TspRl | AA: 200 | 18 |
5′-GTTGTGGATACCTTGCACTA-3′ | AG: 200+129+71 | |||||
GG: 129+71 |
Abbreviations: PCR, polymerase chain reaction; SNP, single-nucleotide polymorphism.