Table 2.
Transcription factor binding motifs linked to aspen co-regulated gene clusters.
| Co-Regulated Cluster | Method | TF Binding Motif Name | Sequence | #Genes |
|---|---|---|---|---|
| Cluster 1 (106) | Enriched | MYB1AT | WAACCA | 74 |
| Enriched | MARTBOX | TTWTWTTWTT | 69 | |
| Complex | HSE | CTNGAANNTTCNAG | 1 | |
| Cluster 3 (199) | Enriched | SURE1STPAT21 | AATAGAAAA | 18 |
| Cluster 5 (180) | Complex | CARGATCONSENSUS | CCWWWWWWGG | 7 |
| Complex | E2FCONSENSUS | WTTSSCSS | 28 | |
| Cluster 6 (140) | Complex | CARGATCONSENSUS | CCWWWWWWGG | 3 |
| Complex | E2FCONSENSUS | WTTSSCSS | 16 | |
| Cluster 7 (268) | Enriched | BIHD1OS | TGTCA | 189 |
| Complex | CARGATCONSENSUS | CCWWWWWWGG | 11 | |
| Complex | E2FCONSENSUS | WTTSSCSS | 26 | |
| Cluster 8 (173) | Complex | CARGATCONSENSUS | CCWWWWWWGG | 11 |
| Complex | E2FCONSENSUS | WTTSSCSS | 26 | |
| Cluster 9 (118) | Enriched | MARTBOX | TTWTWTTWTT | 69 |
| Enriched | CAATBOX1 | CAAT | 118 | |
| Enriched | CACTFTPPCA1 | YACT | 118 | |
| Enriched | ARR1AT | NGATT | 118 | |
| Enriched | RBCSCONSENSUS | AATCCAA | 33 | |
| Complex | CARGATCONSENSUS | CCWWWWWWGG | 7 | |
| Complex | E2FCONSENSUS | WTTSSCSS | 26 |
Numbers in parentheses after co-regulated cluster number is the total number of genes associated with that cluster. “Method” refers to how TF binding motif was associated with cluster: either from known TF binding motifs in regulating sensor complex, or if found to be statistically, significantly enriched in set of co-regulated genes. “#Genes” indicates the number of genes within the co-regulated cluster that have the TF binding motif at least once within 1000 bp upstream region.