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. 2016 Jan 19;23:9. doi: 10.1186/s12929-016-0228-5

Table 1.

The used primers in this study

Amplified factor primers 5′ to 3′ Product size (bp) AT (°C) Genbank accession number
miR-21 S TGTCGGGTAGCTTATCAGAC ~90 55 NR_029493
AS Adapter primer in kit
U6-snRNA S GCTTCGGCAGCACATATAC ~120 55 NR_004394
AS Adapter primer in kit
PTEN S ACCAGAGACAAAAAGGGAGTA 173 56 NM_000314
AS ACCACAAACTGAGGATTGCA
HPRT S TGGACTAATTATGGACAGGACT 219 56 NM_000194
AS CCTGTTGACTGGTCATTACAAT
PTEN Promoter
 Unmethylated (−300)a S-U TGGGTTTTGGAGGTTGTTGGT 173 55 NG_007466.2
AS-U ACTTAACTCTAAACCACAACCA
 Methylated (−298)a S-M GGTTTCGGAGGTCGTCGGC 155 57
AS-M CAACCGAATAATAACTACTACGACG

S sense, AS antisense, U unmethylated, M methylated, AT annealing temperature

aDistance of the 5′ nucleotide of the sense primer from the transcription start site of PTEN gene