For each of Anc-gk
dup and Anc-GK1
PID, an alternate reconstruction (Alt-All) was synthesized, containing the next-best amino acid state at all sites with multiple plausible states ((PP>0.2). The enzyme activity of Anc-gk
dup in a coupled enzymatic assay for cofactor turnover (panel
A) and the Pins-binding activity of Anc_GK1
PID (panel
B) in a fluorescence anisotropy assay are shown for both maximum likelihood and Alt-All reconstructions. Affinities and maximal velocities differ quantitatively, but the presence/absence of each property is robust to incorporation of uncertainty about the ancestral sequence (see
Figure 1F).