Table S3.
Genotype and sample summary for X chromosome SNP analysis
| Genotype (Chr:scaffold:coordinate:REF > ALT) | |||||||||||||||
| Position within group (left to right in Fig. 4A) | ID | Type | Gender | Location | Year of collection | ChrX:GL867574:1996160:G > A | ChrX:GL867574:2384835:G > A | ChrX:GL867593:1106751:G > A | ChrX:GL867593:1192257:C > G | ChrX:GL867593:1194386:A > T | ChrX:GL867593:1194433:C > T | ChrX:GL867594:938376:G > A | ChrX:GL867607:103606:C > T | ChrX:GL867607:963505:G > A | ChrX:GL867657:38331:C > T |
| F-1 | 232H | Devil germ line | Female | Bronte | 2014 | G | G | G/A | C | A | C | G/A | C/T | G/A | C/T |
| F-2 | 233H | Devil germ line | Female | Bronte | 2014 | G | G | G/A | C | A | C | A | T | G | C |
| F-3 | 236H | Devil germ line | Female | Bronte | 2014 | G | G | G/A | C | A | C | G | T | G | T |
| F-4 | 239H | Devil germ line | Female | Kempton/Elderslie | 2014 | G | G | G | C | A | C | G | C | A | C/T |
| F-5 | 241H | Devil germ line | Female | Kempton/Elderslie | 2014 | G | G | G | C | A | C | G/A | C | A | C/T |
| F-6 | 242H | Devil germ line | Female | Kempton/Elderslie | 2014 | G/A | G | A | G | A | C | A | C | A | T |
| F-7 | 245H | Devil germ line | Female | Kempton/Elderslie | 2014 | G/A | G/A | G | C | A | C | G/A | C | A | C |
| F-8 | 247H | Devil germ line | Female | Kempton/Elderslie | 2014 | G | G | G/A | C | T | C | G | C | A | C/T |
| F-9 | 248H | Devil germ line | Female | Kempton/Elderslie | 2014 | G/A | G/A | G/A | C | A | C | A | C | A | T |
| F-10 | 249H | Devil germ line | Female | Kempton/Elderslie | 2014 | G | G | G/A | C | A | C | G/A | C | A | C/T |
| F-11 | 250H | Devil germ line | Female | Kempton/Elderslie | 2014 | G/A | G/A | A | C/G | T | C/T | G/A | C/T | G/A | C/T |
| F-12 | 251H | Devil germ line | Female | Fentonbury | 2014 | G | G | G/A | C | A | C | G/A | C | A | C/T |
| F-13 | 252H | Devil germ line | Female | Fentonbury | 2014 | G/A | G/A | G | C | A | C | G/A | C | A | C/T |
| F-14 | 253H | Devil germ line | Female | Fentonbury | 2014 | G | G/A | G/A | C/G | A/T | C/T | G | C | A | C/T |
| F-15 | 254H | Devil germ line | Female | Fentonbury | 2014 | G | G | G/A | C/G | A/T | C/T | G | C | A | C/T |
| F-16 | 257H | Devil germ line | Female | Fentonbury | 2014 | G | G | G | C | A | C | G | C/T | A | C/T |
| F-17 | 258H | Devil germ line | Female | Fentonbury | 2014 | G | G | A | C/G | A/T | C/T | G/A | T | G/A | C |
| F-18 | 262H | Devil germ line | Female | Buckland | 2014 | G/A | G/A | G | C | A | C | G/A | C/T | A | C/T |
| F-19 | 264H | Devil germ line | Female | Buckland | 2014 | G/A | G/A | G | C | A | C | G/A | C | A | C/T |
| F-20 | 265H | Devil germ line | Female | Buckland | 2014 | G | G | G | C | A | C | G/A | C/T | A | C |
| F-21 | 266H | Devil germ line | Female | Buckland | 2014 | G/A | G/A | G/A | C/G | A/T | C/T | G | C/T | G | C/T |
| F-22 | 272H | Devil germ line | Female | Buckland | 2014 | G | G | G | C | A | C | G/A | C/T | A | C/T |
| F-23 | 273H | Devil germ line | Female | Buckland | 2014 | G/A | G/A | G | C | A | C | G/A | C/T | G/A | C/T |
| F-24 | 278H | Devil germ line | Female | Stony Head | 2014 | G | G | G | C | A | C | A | C | A | T |
| F-25 | 279H | Devil germ line | Female | Stony Head | 2014 | G | G | G | C | A | C | G/A | C | G/A | C/T |
| F-26 | 280H | Devil germ line | Female | Stony Head | 2014 | G | G | G | C | A | C | G/A | C | A | T |
| F-27 | 281H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | G | T | T | G | C/T | G | C/T |
| F-28 | 283H | Devil germ line | Female | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | C/T |
| F-29 | 284H | Devil germ line | Female | Woolnorth | 2014 | G | A | A | G | T | T | G | T | G | T |
| F-30 | 285H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | G | T | T | G/A | C | G | T |
| F-31 | 287H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | G | T | T | G/A | C | A | T |
| F-32 | 289H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | C/G | A/T | C/T | G/A | C | G | T |
| F-33 | 293H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | G | T | T | G/A | C | G | T |
| F-34 | 298H | Devil germ line | Female | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | C/T |
| F-35 | 301H | Devil germ line | Female | Woolnorth | 2014 | G | G/A | A | C | T | C | G | C/T | G/A | T |
| F-36 | 302H | Devil germ line | Female | Woolnorth | 2014 | G | A | G | C | A | C | A | T | G | T |
| F-37 | 91H | Devil germ line | Female | Taronga Zoo | 2006 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| M-1 | 237H | Devil germ line | Male | Bronte | 2014 | G | G | G | C | A | C | G | C | G | T |
| M-2 | 238H | Devil germ line | Male | Kempton/Elderslie | 2014 | G | G | A | G | T | T | G | C | A | C |
| M-3 | 240H | Devil germ line | Male | Kempton/Elderslie | 2014 | A | G | A | C | A | C | A | C | A | T |
| M-4 | 243H | Devil germ line | Male | Kempton/Elderslie | 2014 | A | A | G | C | A | C | G | C | A | C |
| M-5 | 244H | Devil germ line | Male | Kempton/Elderslie | 2014 | G | G | G | C | A | C | G | C | A | T |
| M-6 | 246H | Devil germ line | Male | Kempton/Elderslie | 2014 | G | G | G | C | A | C | G | T | G | T |
| M-7 | 255H | Devil germ line | Male | Fentonbury | 2014 | G | G | G | C | A | C | A | T | G | T |
| M-8 | 256H | Devil germ line | Male | Fentonbury | 2014 | A | A | A | G | T | T | A | T | G | C |
| M-9 | 259H | Devil germ line | Male | Fentonbury | 2014 | G | G | G | C | A | C | G | C | A | T |
| M-10 | 260H | Devil germ line | Male | Buckland | 2014 | A | A | A | C | A | C | A | C | A | C |
| M-11 | 261H | Devil germ line | Male | Buckland | 2014 | G | G | A | C | A | C | G | T | G | C |
| M-12 | 263H | Devil germ line | Male | Buckland | 2014 | A | A | A | G | T | C | G | C | A | T |
| M-13 | 267H | Devil germ line | Male | Buckland | 2014 | A | A | A | G | T | T | G | C | A | T |
| M-14 | 268H | Devil germ line | Male | Buckland | 2014 | G | G | G | C | A | C | G | C | G | T |
| M-15 | 269H | Devil germ line | Male | Buckland | 2014 | A | A | A | G | T | T | A | T | G | C |
| M-16 | 270H | Devil germ line | Male | Buckland | 2014 | G | G | G | C | A | C | A | C | A | C |
| M-17 | 271H | Devil germ line | Male | Buckland | 2014 | A | A | G | C | A | C | G | C | G | T |
| M-18 | 274H | Devil germ line | Male | Buckland | 2014 | G | G | A | G | T | C | G | C | A | C |
| M-19 | 275H | Devil germ line | Male | Stony Head | 2014 | G | G | G | C | A | C | G | C | A | C |
| M-20 | 276H | Devil germ line | Male | Stony Head | 2014 | G | G | G | C | A | C | A | C | A | T |
| M-21 | 282H | Devil germ line | Male | Woolnorth | 2014 | G | A | A | G | T | T | G | C | G | T |
| M-22 | 286H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | C |
| M-23 | 288H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | T |
| M-24 | 290H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | C |
| M-25 | 291H | Devil germ line | Male | Woolnorth | 2014 | G | A | A | G | T | T | G | T | G | T |
| M-26 | 292H | Devil germ line | Male | Woolnorth | 2014 | G | G | A | G | T | T | G | C | G | T |
| M-27 | 294H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | G | A | C | A | C | G | T |
| M-28 | 295H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | T | G | T |
| M-29 | 296H | Devil germ line | Male | Woolnorth | 2014 | G | A | A | G | T | T | G | C | G | C |
| M-30 | 297H | Devil germ line | Male | Woolnorth | 2014 | G | G | A | G | T | T | G | T | G | C |
| M-31 | 299H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | T | G | T |
| M-32 | 300H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | T |
| M-33 | 303H | Devil germ line | Male | Woolnorth | 2014 | G | A | G | C | A | C | A | C | G | C |
| M-34 | 202H1 | Devil germ line | Male | Cygnet | 2014 | G | G | A | C | A | C | A | C | A | C |
| M-35 | 203H | Devil germ line | Male | Snug | 2014 | G | G | G | C | A | C | A | C | A | C |
| M-36 | 53H | Devil germ line | Male | Narawntapu | 2007 | G | A | A | G | T | T | G | T | G | T |
| M-37 | 31H | Devil germ line | Male | Forestier | 2007 | G | G | G | C | A | C | G | C | G | C |
| DFT1-1 | 86T2 | DFT1 (cell line) | N/A | Fentonbury | 2005 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-2 | 87T2 | DFT1 (cell line) | N/A | Forestier | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-3 | 88T2 | DFT1 (cell line) | N/A | Freycinet | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-4 | 90T2 | DFT1 (cell line) | N/A | Forestier | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-5 | 204T | DFT1 (cell line) | N/A | Forestier | 2012 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-6 | 85T | DFT1 (cell line) | N/A | Fentonbury | 2005 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-7 | 86T | DFT1 (cell line) | N/A | Fentonbury | 2005 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-8 | 87T | DFT1 (cell line) | N/A | Forestier | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-9 | 88T | DFT1 (cell line) | N/A | Freycinet | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT1-10 | 53T | DFT1 (cell line) | N/A | Narawntapu | 2007 | G/A | G/A | G/A | C/G | A/T | C/T | G/A | C/T | G/A | C/T |
| DFT2-1 | 202T1 (RV-T) | DFT2 (primary tumor) | N/A | Cygnet | 2014 | G | G | G | C | A | C | A | C | G | C |
| DFT2-2 | 203T1 (SN-T; upper lip) | DFT2 (primary tumor) | N/A | Snug | 2014 | G | G | G | C | A | C | A | C | G | C |
All coordinates are from genome build DEVIL7.0.