Table S5.
Structural variant breakpoint coordinates and primers
| Lower breakpoint scaffold | Lower breakpoint strand | Lower breakpoint coordinate range | Upper breakpoint scaffold | Upper breakpoint strand | Upper breakpoint coordinate range | Forward oligo | Reverse oligo | ||
| Chr2:GL841444 | + | 373844 | 374130 | Chr2:GL841242 | + | 200819 | 201085 | AGGAGCGAGTGTTTCTGCTTATAC | CCTTGCTATCACAAAAAGAGCTG |
| Chr2:GL841455 | + | 26550 | 26748 | Chr2:GL841454 | + | 239574 | 239822 | GCAAGAGTTCTTCATCAGAAGATAACC | GATCAGTTAAAGGAAGTGGAGAGATTG |
| ChrX:GL867598 | — | 2128177 | 2128435 | Chr2:GL841420 | + | 441752 | 441984 | AGTAAAAATGCAATAGGCCCAGG | GGTGATGGCAGATTTCAGCTAAG |
| Chr5:GL861655 | — | 2377162 | 2377364 | Chr5:GL861655 | + | 2363778 | 2364045 | GGAGGATCAGGAAGGACAGTAAA | CTTACTTTTCATTAGGCCACTCAAC |
| Chr5:GL861695 | — | 228625 | 228899 | Chr2:GL841451 | — | 4043144 | 4043428 | AAGATGGGAAGACAGGTAAGACAG | CTAAAGTTCTGGAGCAAACCCTT |
| Chr5:GL861708 | + | 729973 | 730179 | Chr3:GL849528 | + | 255127 | 255416 | GGTATGTGTGTGGACAAGAGCAC | CTAAGACACCCTCAATTCTCACTTT |
| Chr1:GL834489 | + | 324236 | 324463 | Chr1:GL834489 | — | 320634 | 320880 | GGAATAAAGGAGTCCTACCAAATTCTC | ACTTCAGTTAGGTACAAGGAGTCTGTG |
| Chr4:GL856767 | — | 219206 | 219478 | Chr1:GL834488 | — | 1096487 | 1096770 | GTACTGATTTCCTGCCAGTCTCTT | GGAACAATAGCATTGGTAAAGGG |
| Chr2:GL841709 | + | 293121 | 293343 | Chr2:GL841454 | + | 756307 | 756590 | ACATTGTTACCTCACTTAAACCCTG | AAGTGGAAGCTACAATTCATCGAG |
| ChrX:GL867695 | — | 14770 | 15030 | ChrX:GL867579 | + | 365807 | 366051 | AGTTAGTGTTCTAAGGATCTTCCCAG | CAGCTCATTTTACAGAGGAGAAAAC |
| Chr3:GL849903 | — | 2332457 | 2332734 | Chr3:GL849903 | + | 2329315 | 2329563 | AGAAGACAGAAAGATTTCCAAGGAG | GTGCTAACTGTTTTACCTCTCTTCATC |
| Chr5:GL861537 | — | 231027 | 231294 | Chr2:GL841419 | + | 404988 | 405201 | GACCATGGAGCTGAATTTTTATCC | GCTAACTATGAATTCTAACCAAACCCC |
| Chr1:GL834551 | — | 1036871 | 1037215 | Chr1:GL834446 | — | 378385 | 378698 | AGATAGGTGAAGGTAGAGATAAGGAGG | GAGAGAGCAAGAGAAAGAGAGAAAA |
| Chr3:GL849558 | — | 1424405 | 1424672 | Chr3:GL849558 | + | 1423958 | 1424197 | TACTGTCCAACACACATGCCTATTT | GGCATCCATTTGAATTTGACACTAC |
All coordinates are from genome build DEVIL7.0.