Table 4.
Subject ID | pcg_00006 | pcg_00008 | pcg_00009 | pcg_00010 | pcg_00011 | pcg_00012 | pcg_00013 | pcg_00014 | pcg_00015 | pcg_00016 | pcg_00017 | pcg_00018 | pcg_00021 | pcg_00022 | pcg_00023 | pcg_00024 | pcg_00025 | pcg_00026 | pcg_00027 | pcg_00028 | pcg_00029 | pcg_00032 | pcg_00034 | pcg_00037 | pcg_00042 | pcg_00049 | pcg_00050 | pcg_00058 | pcg_00059 | pcg_00060 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PC19_103_1 | – | AA | AA | TT | GA | GA | CT | GT | AG | GA | AG | TC | AG | AA | CG | AA | GG | GT | GA | AC | GA | CA | GG | CC | GG | AG | TT | GG | CC | TT |
PC19_103_2 | – | AA | AA | TT | GA | GA | CT | GT | AG | GA | AG | TC | AG | AA | CG | AA | GG | GT | GA | AC | GA | CA | GG | CC | GG | AG | TT | GG | CC | TT |
PC20_104_1 | GA | – | – | – | – | – | CT | GT | AG | GA | AG | TC | AG | GA | CG | TA | AG | GT | GA | AC | GA | CA | GA | CT | GA | GG | CC | GT | GG | AT |
PC20_104_2 | GA | – | – | – | – | – | CT | GT | AG | GA | AG | TC | AG | GA | CG | TA | AG | GT | GA | AC | GA | CA | GA | CT | GA | GG | CC | GT | GG | AT |
PC34_101_1 | GA | CA | – | TT | GA | GA | CC | GG | AA | AA | AA | TT | AA | AA | CC | – | GG | GG | GG | AA | GG | CC | GG | CC | GG | AA | TT | GG | CG | TT |
PC34_101_2 | GA | AA | – | CT | – | GA | CT | GT | AG | – | AG | TC | AG | – | CG | TA | – | GT | – | AC | GA | CA | – | – | – | – | CC | GT | – | – |
PC38_101_1 | GA | CA | GA | – | AA | AA | TT | GT | GG | – | GG | CC | GG | GA | GG | TA | AG | TT | AA | CC | AA | AA | GA | CT | GA | GG | CC | GT | GG | – |
PC38_101_2 | GA | – | – | TT | GA | GA | – | GT | AG | – | AG | TC | AG | AA | CG | TA | GG | GT | GA | AC | GA | – | GG | CC | GG | AA | TT | GG | CC | AT |
Red_River_1 | AA | CA | GA | CT | GA | GA | CT | GT | AG | GA | AG | TC | AG | GA | CG | TA | AG | GT | GA | AC | GA | CA | GA | CT | GA | AG | CC | GT | GG | TT |
Red_River_2 | AA | AA | AA | CT | GA | GA | CT | GG | AG | AA | AG | TC | AG | AA | CG | AA | GG | GT | – | AC | GA | CA | GA | CT | GA | AG | CC | GT | CG | AT |
PC17_109 | GA | CA | – | TT | GA | GA | CC | GG | AA | AA | AA | TT | AA | AA | CC | TA | GG | GG | GG | AA | GG | CC | GG | CC | GG | AA | TT | GG | CC | TT |
PC20_102 | GA | AA | AA | TT | GG | GG | CC | GG | AA | AA | AA | TT | AA | AA | CC | AA | GG | GG | GG | AA | GG | CC | GG | CC | GG | AG | CC | TT | GG | TT |
S. alterniflora (East) | AA | CC | AA | TT | AA | AA | CC | – | – | GG | GG | CC | AA | AA | CC | AA | GG | GG | GG | AA | GG | CC | GG | CC | – | GG | CC | GG | GG | AA |
S. bakeri | AA | CC | AA | TT | AA | AA | CC | – | – | GG | GG | CC | AA | AA | CC | TA | GG | GG | GG | AA | GG | CC | GG | CC | – | GG | CC | GG | GG | AA |
S. patens (Sharp) | AA | CC | AA | TT | AA | AA | CC | – | – | GG | GG | CC | AA | AA | CC | AA | GG | GG | GG | AA | GG | CC | GG | CC | – | GG | CC | GG | GG | AA |
S. patens (Flageo) | AA | CC | AA | TT | AA | AA | CC | – | – | GG | GG | CC | AA | AA | CC | AA | GG | GG | GG | AA | GG | CC | GG | CC | – | GG | CC | GG | GG | AA |
S. patens | AA | CC | AA | TT | AA | AA | CC | – | – | GG | GG | CC | AA | AA | CC | AA | GG | GG | GG | AA | GG | CC | GG | CC | – | GG | CC | GG | GG | AA |
Subject ID | pcg_00061 | pcg_00062 | pcg_00065 | pcg_00066 | pcg_00078 | pcg_00081 | pcg_00083 | pcg_00084 | pcg_00085 | pcg_00088 | pcg_00092 | pcg_00093 | pcg_00098 | pcg_00101 | pcg_00102 | pcg_00103 | pcg_00104 | pcg_00106 | pcg_00109 | pcg_00110 | pcg_00111 | pcg_00112 | pcg_7965 | pcg_14142 | pcg_1186 | pcg_77221 | pcg_13880 | pcg_2412 | pcg_37652 | |
PC19_103_1 | GG | GG | GG | GG | AC | TT | CT | TA | – | AA | CC | GG | CC | GG | AG | TC | CC | CG | GG | GG | CC | AA | AG | GC | CT | GG | GG | GG | CC | |
PC19_103_2 | GG | GG | GG | – | AC | TT | CT | TA | – | AA | CC | GG | CC | GG | AG | TC | CC | CG | GG | GG | CC | AA | AG | GC | CT | GG | GG | GG | CC | |
PC20_104_1 | TG | GC | – | GC | AC | AT | TT | AA | AC | GA | CC | AG | – | GG | AG | CC | GC | – | GA | GT | CC | AA | GG | GC | CT | TT | GG | GG | CC | |
PC20_104_2 | TG | GC | – | GC | AC | AT | TT | AA | AC | GA | CC | AG | – | GG | AG | CC | GC | – | GA | GT | CC | AA | – | GC | GT | TT | GG | GG | CC | |
PC34_101_1 | TG | GC | AG | GG | AC | TT | CT | TA | AA | – | CT | GG | CC | GG | AA | TC | CC | CC | GG | GG | GC | AA | GG | GG | CT | GG | GG | GG | CC | |
PC34_101_2 | TG | – | AG | GC | – | TT | CT | TA | CC | – | CT | GG | AC | AG | AG | CC | CC | CG | GG | GG | – | AA | – | – | TT | GG | GG | GG | CC | |
PC38_101_1 | GG | GG | GG | GC | AC | TT | CT | TT | AC | GA | CT | AG | CC | AG | AG | TC | GC | CG | GA | – | CC | AA | GG | GC | TT | GG | GG | GG | CC | |
PC38_101_2 | GG | GG | GG | GC | CC | TT | CC | TT | CC | GG | TT | GG | AA | – | AG | CC | CC | CC | GG | GG | GC | AA | AG | GG | CT | GG | GG | GG | CC | |
Red_River_1 | TG | GC | AG | GC | AC | AT | CT | TA | CC | GA | CT | AG | AC | AG | GG | – | GC | – | GG | GT | GC | AA | GG | GC | CT | GG | GG | GG | CC | |
Red_River_2 | TG | GC | – | GC | CC | AT | CT | TA | CC | GA | CT | AG | AC | GG | AG | CC | CC | – | GG | GT | GC | AA | AG | – | TT | GG | GG | GG | CC | |
PC17_109 | TG | GC | AG | GG | CC | TT | CC | TT | AC | GG | TT | GG | AC | AG | AG | TC | CC | CC | GG | GG | GC | AA | AG | GG | CC | GG | GG | GG | CC | |
PC20_102 | TG | GC | GG | GC | CC | AT | CT | TA | CC | GA | CT | AG | CC | GG | AA | CC | CC | GG | GA | GT | CC | AA | AG | CC | TT | GG | GG | GG | CC | |
S. alterniflora (East) | – | CC | GG | GC | CC | TT | TT | AA | CC | GG | TT | GG | AA | GG | GG | CC | – | CG | GG | TT | – | AA | GG | CC | ||||||
S. bakeri | TT | CC | GG | GC | CC | TT | TT | AA | CC | GG | CC | AG | AA | GG | GG | TT | CC | CG | GG | TT | CC | AA | GG | CC | ||||||
S. patens (Sharp) | TT | CC | GG | GC | CC | TT | TT | AA | CC | GG | CC | AG | AA | GG | GG | TC | CC | GG | GG | TT | CC | AA | GG | CC | ||||||
S. patens (Flageo) | TT | CC | GG | GC | CC | TT | TT | AA | CC | GG | CC | AG | AA | GG | GG | CC | CC | GG | GG | TT | CC | AA | GG | CC | ||||||
S. patens | TT | CC | GG | GC | CC | TT | TT | AA | CC | GG | CC | GG | AA | GG | GG | CC | CC | GG | GG | TT | CC | AA | GG | CC |