Table 1. Summary of deep sequencing results: small RNAs from virus-infected and mock-inoculated rice small RNA libraries.
| Libraries | RSV-infected e | Mock-inoculated f | ||||
|---|---|---|---|---|---|---|
| RI- 1 | RI-2 | RI-3 | CK-1 | CK-2 | CK-3 | |
| Uniques a | 1503616 | 1377074 | 1437284 | 1236819 | 1259375 | 1275653 |
| Reads b | 5237572 | 4807944 | 4850785 | 4822413 | 4638162 | 4964387 |
| Uniques mapped to the rice genome c | 1041466 (69.3%) | 948160 (68.9%) | 964862 (67.1%) | 991835 (80.1%) | 1015936 (80.7%) | 1037105 (81.3%) |
| Reads mapped to the rice genome | 3897231 (74.4%) | 3562517 (74.1%) | 3763478 (77.6%) | 4331875 (89.8%) | 4256023 (91.8%) | 4367542 (87.9%) |
| Uniques mapped to the virus genome d | 87018 (5.7%) | 79421 (5.8%) | 74246 (5.1%) | 34 | 29 | 23 |
| Reads mapped to the virus genome | 434958 (8.3%) | 386592 (8.0%) | 398842 (8.2%) | 36 | 30 | 43 |
a total number of uniques from each of the three replicates within the set (18–28 nt in length).
b Total number of small RNA reads from each of the three replicates within the set (18–28 nt in length).
C Sequences with perfect match to the rice genome, including those from tRNA, rRNA, snRNA, or snoRNAs.
d Sequence with no more than 1 nt mismatch to the RSV genome.
e RSV-infected: Small RNA library from RSV-infected rice.
f Mock-inoculated: Small RNA library from mock-inoculated rice.