Table 3.
Bacterial Identification at the Genus Level for the PNNL Dataseta
| Escherichia coli K-12 sample number 29-39 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Escherichia | 11/11 | 1.0 | –6498.6 ± 349.0 | 597.7 | 1594 | 15 | 1 |
| Halorhodospira | 2/11 | 2.0 | –14.4 ± 3.0 | 1.7 | 12 | 1 | 6 |
| C. Puniceispirillum | 1/11 | 2.0 | –6.4 ± 0.0 | 1.0 | 3 | 1 | 38 |
| Enterococcus | 1/11 | 3.0 | –4.4 ± 0.0 | 1.0 | 2 | 1 | 5 |
| Lacinutrix | 1/11 | 2.0 | –3.9 ± 0.0 | 1.0 | 2 | 0 | 24 |
| Mycobacterium tuberculosis H37Rv sample number 40-48 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Mycobacterium | 9/9 | 1.0 | –6784.8 ± 729.6 | 725.6 | 937 | 433 | 1 |
| Ethanoligenens | 1/9 | 2.0 | –6.3 ± 0.0 | 1.0 | 1 | 1 | 65 |
| Salmonella | 3/9 | 2.3 | –5.6 ± 0.3 | 1.0 | 1 | 1 | 15 |
| Methanoplanus | 1/9 | 2.0 | –4.5 ± 0.0 | 1.0 | 1 | 0 | 316 |
| Treponema | 2/9 | 2.5 | –2.9 ± 0.1 | 0.5 | 3 | 0 | 3 |
| Salmonella typhimurium ATCC 14028 sample number 49-56 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Salmonella | 8/8 | 1.0 | –5596.0 ± 670.5 | 546.8 | 1050 | 204 | 1 |
| Halorhodospira | 1/8 | 2.0 | –14.4 ± 0.0 | 2.0 | 6 | 1 | 10 |
| Planctomyces | 1/8 | 2.0 | –6.7 ± 0.0 | 1.0 | 2 | 1 | 14 |
| Mycoplasma | 1/8 | 3.0 | –2.1 ± 0.0 | 1.0 | 5 | 0 | 2 |
| Gordonia | 3/8 | 5.3 | –0.8 ± 2.4 | 0.7 | 3 | 0 | 7 |
| Yersinia pestis CO92 sample number 57-65 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Yersinia | 9/9 | 1.0 | -9201.2 ± 897.8 | 847.0 | 1336 | 466 | 1 |
| Azospirillum | 1/9 | 2.0 | –6.8 ± 0.0 | 1.2 | 6 | 0 | 2 |
| C. Carsonella | 1/9 | 2.0 | –5.1 ± 0.0 | 1.0 | 1 | 1 | 9 |
| Tannerella | 1/9 | 3.0 | –4.1 ± 0.0 | 1.0 | 3 | 0 | 16 |
| Novosphingobium | 1/9 | 3.0 | –4.1 ± 0.0 | 1.2 | 7 | 0 | 10 |
| Yersinia pseudotuberculosis PB1 Plus sample number 66-74 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Yersinia | 9/9 | 1.0 | –8043.2 ± 803.2 | 749.7 | 1187 | 400 | 1 |
| Novosphingobium | 1/9 | 2.0 | –21.3 ± 0.0 | 3.0 | 9 | 2 | 7 |
| Syntrophus | 4/9 | 3.5 | –1.5 ± 4.3 | 0.9 | 5 | 0 | 11 |
| C. Uzinura | 4/9 | 2.8 | 0.1 ± 0.8 | 0.2 | 2 | 0 | 63 |
| Arcobacter | 2/9 | 4.5 | 0.4 ± 0.4 | 0.5 | 4 | 0 | 5 |
| Shewanella oneidensis MR-1 sample number 75-81 | |||||||
| Genus | IF | E[R] | E[ln (E u)] | E[WPC] | E[NIP] | E[NUP] | E[CI] |
| Shewanella | 7/7 | 1.0 | –14534.8 ± 8196.6 | 1369.1 | 1841 | 1022 | 1 |
| Cupriavidus | 1/7 | 2.0 | –15.5 ± 0.0 | 3.2 | 15 | 1 | 7 |
| Kyrpidia | 1/7 | 2.0 | –7.7 ± 0.0 | 1.0 | 1 | 1 | 49 |
| Azoarcus | 1/7 | 3.0 | –5.6 ± 0.0 | 1.8 | 19 | 0 | 6 |
| Polaromonas | 1/7 | 3.0 | –4.1 ± 0.0 | 0.7 | 6 | 0 | 12 |
The numerical entries in the table are the expected values E[X]. The E[ln (E u)] is followed by its standard deviation ± σ X