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. 2016 Jan 22;13:7. doi: 10.1186/s12977-015-0232-y

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© Vargiu et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Unrooted phylograms of Gag, Pro, Pol and Env from the consensus sequences in Additional file 4: List S4, with fewer reference sequences than in Fig. 4. A maximum likelihood tree was calculated from Muscle alignments. The asterisks mark instances of possible Env recombination