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. 2016 Jan 22;9:4. doi: 10.1186/s13040-016-0086-4

Table 2.

Comparison of the performance of RF, SVM and ANN under all encoding procedures with both balanced and imbalanced training dataset

EP MLA Balanced Dataset Imbalanced Dataset
TPR TNR F (α = 1) F (β = 2) G-mean WA MCC TPR TNR F (α = 1) F (β = 2) G-mean WA MCC
P-1 RF 0.954 0.924 0.940 0.932 0.939 0.939 0.878 0.842 0.896 0.865 0.880 0.869 0.869 0.739
(0.014) (0.014) (0.010) (0.012) (0.010) (0.010) (0.020) (0.064) (0.018) (0.032) (0.049) (0.030) (0.028) (0.043)
SVM 0.935 0.930 0.933 0.931 0.933 0.933 0.865 0.104 0.982 0.185 0.349 0.320 0.543 0.180
(0.015) (0.017) (0.015) (0.015) (0.016) (0.016) (0.031) (0.027) (0.018) (0.041) (0.031) (0.040) (0.013) (0.061)
ANN 0.892 0.896 0.894 0.895 0.894 0.894 0.787 0.032 0.988 0.061 0.136 0.178 0.510 0.068
(0.064) (0.080) (0.063) (0.062) (0.066) (0.065) (0.129) (0.026) (0.010) (0.046) (0.032) (0.065) (0.011) (0.055)
P-2 RF 0.937 0.901 0.920 0.911 0.919 0.919 0.838 0.883 0.894 0.888 0.891 0.888 0.889 0.777
(0.020) (0.016) (0.016) (0.018) (0.016) (0.016) (0.033) (0.038) () (0.025) (0.030) (0.019) (0.019) (0.035)
SVM 0.720 0.773 0.740 0.752 0.746 0.746 0.493 0.321 0.989 0.482 0.689 0.563 0.655 0.417
(0.029) (0.106) (0.041) (0.026) (0.049) (0.051) (0.108) (0.051) (0.008) (0.055) (0.053) (0.043) (0.025) (0.048)
ANN 0.775 0.777 0.776 0.776 0.776 0.776 0.552 0.305 0.978 0.460 0.661 0.546 0.642 0.383
(0.067) (0.037) (0.049) (0.059) (0.048) (0.045) (0.090) (0.049) (0.014) (0.052) (0.051) (0.043) (0.022) (0.046)
P-3 RF 0.940 0.908 0.925 0.917 0.924 0.924 0.848 0.879 0.891 0.884 0.888 0.885 0.885 0.770
(0.017) (0.015) (0.012) (0.014) (0.012) (0.012) (0.246) (0.044) (0.022) (0.029) (0.034) (0.022) (0.022) (0.042)
SVM 0.789 0.807 0.796 0.800 0.798 0.798 0.595 0.249 0.988 0.395 0.609 0.496 0.619 0.352
(0.044) (0.068) (0.042) (0.042) (0.046) (0.045) (0.090) (0.052) (0.008) (0.062) (0.056) (0.049) (0.026) (0.055)
ANN 0.757 0.760 0.758 0.759 0.759 0.759 0.517 0.272 0.979 0.421 0.626 0.516 0.626 0.355
(0.118) (0.099) (0.067) (0.098) (0.057) (0.048) (0.086) (0.066) (0.009) (0.081) (0.072) (0.064) (0.034) (0.076)

The values inside the brackets () are the standard errors

EP encoding procedure, MLA machine learning approaches