TABLE 3.
08-5578 LGI1 target gene | Sequence (5′–3′) |
Length of PCR product (bp) | ||
---|---|---|---|---|
Forward primer | TaqMan probe | Reverse primer | ||
bglAa | AGCTGCTGCTGCAAACCAAT | CGAAGGCGCTTACAACGTCGATGG | AGTAACATCTTGAACGGAAAGTCCTT | 73 |
rRNA genea | CTTCCGCAATGGACGAAAGT | TGACGGAGCAACGCCGCGT | TTACGATCCGAAAACCTTCTTCA | 66 |
lmo1901 | TGATCCGCCGTATTACGAAAC | AGGGTCACTACGCTGTGGTGTTCCGA | AAGCCGTGCATGATCTTCCT | 70 |
lmo1891 | ACGGCAGGCAGTGGTTATG | TGCCAACACAGGTGAGCAGGAAGA | AAGGCAGTTCCTTTTCCTCAGA | 67 |
lmo1889 | GGCGGGAAAACCGAGAAG | AACACTTTGACAGCCCAGAACACGCC | TGCGGCGTACCACATTGA | 70 |
lmo1885 | CGGCGATGTGGTGGAATAC | TGTCGGGCTTGGAGGTAACAGTT | GAGCCAGCGGAGCATTTC | 65 |
lmo1883 | TTCACCTCACTATGCTCCACTACTG | CTATGCGGTTGGTGACGGGAATGTAGA | CATTCCACCACCGCCATT | 72 |
lmo1882 | CCGCTTTTGCAGCAGGAA | AGGCGATGTTGCCGGAGCGATT | GGGATGCAGTCGTCCATGTC | 66 |
lmo1876 | CACTTACCGCTGCGTTTGG | CGCTCCGAGAATACCCGACTGCTACA | TGTCGAAGAATTGCCTGCTCTT | 69 |
lmo1873 | ACAGCATTCGTATGAAAGCCATT | TTTACGCTTTGTTTTTCGGCACGGAA | TCGTCAGCGTTCATTTTGAGA | 73 |
lmo1866 | CACGTCATTAGTCTTCGCAGAGA | ATGCTGCCCGCCTTGGATATGACA | ATTAAATCCTGCCATTGCTTTCC | 74 |
lmo1865 | AGTTCCTATCCCTGCGGAAGA | CATCCACAGCTTATGCTTCGGGATGAA | TTGGGATACTTGCCCGCATA | 70 |
lmo1864 | ACCGGGAGATGCTGACAATT | CTGATGAATACGGTGGCAAGCTGCC | CTGCGAAAATCATCACACGATT | 69 |
lmo1863 | TCTCCCGCAGTACCGTGAA | CGTGCCATTGCTGACCTTGAA | CCTTGGAGAGATGGCCAGTCT | 63 |
lmo1862 | AAATGTCTGATGGACTTACAAAGCTATT | CCAAGTGCAGGGATGTTCATAGCATTTATCCTA | GCACTAACCGGTATTTTTTTTAATGC | 109 |
lmo1861 | GGAAATAGAAGCTTTCGCCAGTAT | CGCAGGAACAACGTAGGGCTATATCCG | GGAACTCCCGAGAAAAGAAAATG | 79 |
lmo1859 | AAGAGCGCGAAGCTGAAAGATA | AAGGAAGTGCATTCATCAATTTGAGCTTTCC | CCTCATCTTGGAATCGTTCCA | 78 |
lmo1857 | CACTGCCGCCAAGAAAAAAA | CCAGCTTCTTGACAGTAATGGTTTTGACCGA | GCAACTCTGTCCGAGCAATTT | 77 |
Housekeeping gene not carried on LGI1. The relevant primers were described by Tasara and Stephan (38).