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. 2016 Jan 22;82(3):928–938. doi: 10.1128/AEM.02440-15

TABLE 1.

Isolate information and molecular characterization of the L. monocytogenes genomes used in this study

Isolate Type U.S. state or country Outbreak associateda Yr Source Pasteur ST CCb EC Reference(s)c GenBank accession no.
F2365 4b California Yes, Mexican-style cheese 1985 Cheese 1 1 I 31, 32 NC_002973.6
SLCC 2378 4e NAe No NA Poultry 73 1 I 33 FR733644
LL195 4b Switzerland Yes, Vacherin Mont d'Or cheese 1983 Human 1 1 I 34 HF558398.1
Lm_1824 4b Italy Nod 2012 Cheese processing facility 2 2 IV 25 AZIV00000000
ATCC 19117 4d NA No NA Sheep 2 2 IV 33 FR733643
HPB2262 4b Italy Yes, corn (gastroenteritis) 1997 Human 2 2 IV 35, 36 AATL00000000
ScottA 4b Massachusetts Yes, milk 1983 Human 290 2 IV 37, 38 CM001159.1
F4233 1/2b Pennsylvania Yes, unknown 1987 Human 3 3 VIII 39 JMUA00000000
FSL N1-017 1/2b NA No 1998 Food 3 3 VIII 36 AARP00000000
G6054 1/2b Illinois Yes, chocolate milk (gastroenteritis) 1994 Human 3 3 VIII 40 JPTW00000000
SLCC 2482 7 NA No 1966 Human 3 3 VIII 33 FR720325
SLCC 2755 1/2b NA No 1967 Chinchilla 66 3 VIII 33 FR733646
07PF0776 4b USA No NA Human 4 4 41, 42 NC_017728.1
Clip80459 4b NA No 1999 Human 4 4 NC_012488.1
L312 4b NA Unknown NA Cheese 4 4 30 FR733642
FSL J2-064 1/2b USA No 1989 Human 5 5 VI AARO00000000.2
L1181 1/2b USA No 2009 Human 5 5 VI JNGR00000000
L1254 1/2b USA No 2009 Human 5 5 VI JNFI00000000
L2624 1/2b Multistate, USA Yes, cantaloupe 2011 Human 5 5 VI 4 CP007686
L2663 1/2b Multistate, USA Yes, cantaloupe 2011 Human 5 5 VI 4 JNHA00000000
Lm_1886 1/2b Italy Nod 2012 Cheese processing facility 5 5 VI 25 AZIX00000000
H7858 4b Multistate, USA Yes, frankfurter 1998 Frankfurter 6 6 II 32 AADR00000000
G4599 1/2b Italy Yes, unknown (gastroenteritis) 1993 Human 59 59 43 JPTX00000000
FSL J1-175 1/2b USA No NA Water 87 36 AARK00000000
FSL J1-194 1/2b USA No 1997 Human 88 36 AARJ00000000
SLCC 2540 3b USA No 1956 Human 617 33 FR733645
10403S 1/2a USA No 1987 Reference strain 85 7 VII 36 AARZ00000000
J2692 1/2a USA No 2003 Human 7 7 VII JNGJ00000000
L1846 1/2a Louisiana Yes, hog head cheese 2010 Human 7 7 VII 44 CP007688
L2626 1/2a Multistate, USA Yes, cantaloupe 2011 Human 561 7 VII 4 CP007684
L2676 1/2a Multistate, USA Yes, cantaloupe 2011 Human 7 7 VII 4 CP007685
SLCC 5850 1/2a United Kingdom No 1924 Rabbit 12 7 VII 33 FR733647
EGD 1/2a NA No NA Reference strain 12 7 VII 45 NC_022568.1
08_5578 1/2a Canada Yes, deli meat 2008 Human 292 8 V 26 NC_013766.1
08_5923 1/2a Canada Yes, deli meat 2008 Human 120 8 V 26 NC_013768.1
Lm_1823 1/2a Italy Nod 2012 Cheese processing facility 8 8 V 25 AZIU00000000
Lm_1889 1/2a Italy Nod 2012 Cheese processing facility 8 8 V 25 AZIY00000000
EGDe 1/2a NA No NA Reference strain 35 9 46 NC_003210.1
FSL R2-561 1/2c USA No NA Human 9 9 36 AARS00000000
LO28 1/2c NA No 1985 Reference strain 210 9 36 AARY00000000
SLCC 2372 1/2c United Kingdom No 1935 Human 122 9 33 FR733648
SLCC 2479 3c NA No 1966 NA 9 9 33 FR733649
F4235 1/2a Pennsylvania Yes, unknown 1987 Human 11 11 III 39 JNGK00000000
F6854 1/2a Oklahoma No 1988 Human 11 11 III 32 AADQ00000000
F6900 1/2a USA No 1988 Human 86 11 III 27 AARU00000000.2
J0161 1/2a Multistate, USA Yes, turkey deli meat 2000 Human 11 11 III 27, 47 AARW00000000
J0221 1/2a USA No 2000 Human 11 11 III JNGL00000000
J0847 1/2a USA No 2001 Human 11 11 III JNGM00000000
J2818 1/2a Multistate, USA Yes, turkey deli meat 2000 Turkey deli meat 86 11 III 27, 47 AARX00000000
L1023 1/2a Multistate, USA Yes, Mexican-style cheese 2009 Human 11 11 III 48 JNGN00000000
2012-L5240 1/2a Multistate, USA Yes, ricotta salata 2012 Human 101 101 12 JNGO00000000
2012L-5323 1/2a Multistate, USA Yes, ricotta salata 2012 Human 101 101 12 JNGY00000000
Lm_1840 1/2a Italy Nod 2012 Cheese processing facility 101 101 25 AZIW00000000
Finland1988 3a Finland Yes, butter 1988 Unknown 155 36 AART00000000
FSL J2-003 1/2a USA No 1993 Human 89 AARM00000000
FSL N3-165 1/2a USA No NA Soil 90 AARQ00000000
L1118 1/2a Multistate, USA Yes, sprouts 2009 Human 573 2 JNGQ00000000
L2074 1/2a Texas Yes, celery 2010 Human 378 49 CP007689
L2625 1/2a Multistate, USA Yes, cantaloupe 2011 Human 29 4 CP007687
SLCC 7179 3a Austria No 1986 Cheese 91 33 FR733650
N53-1 1/2a Denmark No 2002 Salmon 121 121 50 HE999705.1
La111 1/2a Denmark No 1996 Salmon processing facility 121 121 50 HE999704.1
Lm_1880 1/2a Italy Nod 2012 Cheese processing facility 121 121 25 AZIZ00000000
FSL J2-071 4c USA No 1994 Animal 131 71 36 AARN00000000
SLCC 2376 4c NA No NA Poultry 71 71 33 FR733651
HCC23 4a USA No NA Catfish 201 51 NC_011660.1
L99 4a Netherlands No 1950 Cheese 201 52 FM211688
M7 4a China No NA Milk 201 53 CP002816.1
FSL J1-208 4a Georgia No 1998 Animal 569 54 AARL00000000
a

Outbreaks designated according to food source, if known. All outbreaks were invasive listeriosis unless otherwise noted.

b

Clonal complex numbers assigned based on Pasteur MLST ST as well as data presented by Ragon et al. (5).

c

References are those describing the genome sequence of a given isolate as well as any publication describing the outbreak with which a given isolate was associated.

d

Isolates from ricotta salata processing facility; not classified as outbreak related because no matching human cases were identified.

e

NA, not available.