TABLE 2.
Outbreak isolates | Clonal complex | No. of total hqSNPsa | No. of hqSNPs in protein coding genesb | No. per core/ no. per accessoryc |
No. for S/ no. for Nd |
---|---|---|---|---|---|
L2624 vs L2663 | 5 | 7 | 7 | 0/7 | 2/5 |
L2626 vs L2676 | 7 | 207 | 169 | 139/30 | 108/61 |
2012L-5240 vs 2012L-5323 | 101 | 4,244 | 3,868 | 80/3,788 | 2,775/1,093 |
Total number of high-quality SNPs determined as described by Katz et al. (15).
Number of hqSNPs located within protein coding genes.
Number of hqSNPs in protein coding genes that are either the core genome or the accessory genome.
Number of hqSNPs in protein coding genes that lead to a synonymous (S) or nonsynonymous (N) change.