TABLE 2.
Variation in hqSNPs within outbreak strains of L. monocytogenes from the same clonal complex
| Outbreak isolates | Clonal complex | No. of total hqSNPsa | No. of hqSNPs in protein coding genesb | No. per core/ no. per accessoryc |
No. for S/ no. for Nd |
|---|---|---|---|---|---|
| L2624 vs L2663 | 5 | 7 | 7 | 0/7 | 2/5 |
| L2626 vs L2676 | 7 | 207 | 169 | 139/30 | 108/61 |
| 2012L-5240 vs 2012L-5323 | 101 | 4,244 | 3,868 | 80/3,788 | 2,775/1,093 |
a
Total number of high-quality SNPs determined as described by Katz et al. (15).
b
Number of hqSNPs located within protein coding genes.
c
Number of hqSNPs in protein coding genes that are either the core genome or the accessory genome.
d
Number of hqSNPs in protein coding genes that lead to a synonymous (S) or nonsynonymous (N) change.