Skip to main content
. 2016 Jan 5;113(3):674–679. doi: 10.1073/pnas.1523683113

Table 1.

The negative binomial generalized linear regression for modeling region effects on species richness with DBH ≥ 1 cm and DBH ≥ 10 cm

Explanatory variables β^ SE z Pr(>|z|)
DBH ≥ 1 cm
 Intercept 5.801 0.217 26.6 <2e-16
 Africa 0.256 0.397 0.7 0.52
 Europe −3.071 0.422 −7.3 3.48e-13
 Nearctic −2.087 0.302 −6.9 4.85e-12
 Temperate Asia −0.946 0.270 −3.5 4.66e-04
 Tropical Asia 0.217 0.269 0.8 0.42
DBH ≥ 10 cm
 Intercept 5.465 0.235 23.3 <2e-16
 Africa 0.213 0.497 0.4 0.67
 Europe −3.268 0.549 −6.0 2.59e-09
 Nearctic −2.407 0.341 −7.1 1.64e-12
 Temperate Asia −0.951 0.292 −3.3 0.0011
 Tropical Asia 0.298 0.291 1.0 0.31

The log link function is log(μ)=βx, where β is the vector of regression coefficients (including the intercept) and x is the character region variable (Africa, Europe, Nearctic, Neotropical, Temperate Asia, Tropical Asia). Because the variables have been standardized to a range of 0–1, the β coefficients are standardized effect sizes. The region effects were coded in reference to the Neotropical forests (the intercept). Compared with the baseline forests, European, North American, and Temperate Asian forests have reduced tree diversity.